miRNA display CGI


Results 21 - 40 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 3' -66.6 NC_006151.1 + 140209 0.66 0.469766
Target:  5'- -aCCGCGGGgGCGGuGCugcagaaccuGCGCCugaagcucgGGCCGu -3'
miRNA:   3'- cgGGCGCUCgCGCC-CG----------CGCGG---------CUGGC- -5'
29383 3' -66.6 NC_006151.1 + 28099 0.66 0.469766
Target:  5'- cGUCCuCGAGCG-GGGCGCggcuccucGUCGGCuCGg -3'
miRNA:   3'- -CGGGcGCUCGCgCCCGCG--------CGGCUG-GC- -5'
29383 3' -66.6 NC_006151.1 + 49341 0.66 0.469766
Target:  5'- gGCCUGCGcGC-CGGaccCGCGCCG-CCa -3'
miRNA:   3'- -CGGGCGCuCGcGCCc--GCGCGGCuGGc -5'
29383 3' -66.6 NC_006151.1 + 65047 0.66 0.469766
Target:  5'- gGCCCgGCG-GCgGCGGGCGC-CCGuuaauaaaguCCa -3'
miRNA:   3'- -CGGG-CGCuCG-CGCCCGCGcGGCu---------GGc -5'
29383 3' -66.6 NC_006151.1 + 65316 0.66 0.469766
Target:  5'- aGCCCGCGGcCGuUGaGGaacacgaGCGCgCGGCCGa -3'
miRNA:   3'- -CGGGCGCUcGC-GC-CCg------CGCG-GCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 130509 0.66 0.469766
Target:  5'- cGCCgCGCGucucgGGCGCGGGCGuCGCguACa- -3'
miRNA:   3'- -CGG-GCGC-----UCGCGCCCGC-GCGgcUGgc -5'
29383 3' -66.6 NC_006151.1 + 34127 0.66 0.469766
Target:  5'- cGCCCccccacCGGGCGgGGuccGCGCuCCGACCc -3'
miRNA:   3'- -CGGGc-----GCUCGCgCC---CGCGcGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 4311 0.66 0.4689
Target:  5'- aGCUCGCGGGgcaCGCGGccgggcuGCGCGgCGGCg- -3'
miRNA:   3'- -CGGGCGCUC---GCGCC-------CGCGCgGCUGgc -5'
29383 3' -66.6 NC_006151.1 + 138234 0.66 0.46717
Target:  5'- cGCgCGCacGAGUacGCGGGCGCGaCCGcgcagcggguggugGCCa -3'
miRNA:   3'- -CGgGCG--CUCG--CGCCCGCGC-GGC--------------UGGc -5'
29383 3' -66.6 NC_006151.1 + 119427 0.66 0.461141
Target:  5'- aGCgCUGCGA-CGCGGGCacguuCGUgGGCCGc -3'
miRNA:   3'- -CG-GGCGCUcGCGCCCGc----GCGgCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 133738 0.66 0.461141
Target:  5'- gGCgaGCGAGUGggguCGGGCGCguGCgGAUCGa -3'
miRNA:   3'- -CGggCGCUCGC----GCCCGCG--CGgCUGGC- -5'
29383 3' -66.6 NC_006151.1 + 135801 0.66 0.461141
Target:  5'- uGCCgGgCGAGCGCGccgaGGCcgagcuuuuagcGCGCCGccCCGg -3'
miRNA:   3'- -CGGgC-GCUCGCGC----CCG------------CGCGGCu-GGC- -5'
29383 3' -66.6 NC_006151.1 + 3450 0.66 0.461141
Target:  5'- -gCCGuCGGGCGCGGG-GUGCuCGGgCa -3'
miRNA:   3'- cgGGC-GCUCGCGCCCgCGCG-GCUgGc -5'
29383 3' -66.6 NC_006151.1 + 54943 0.66 0.461141
Target:  5'- uGCCaCGCGcuGCGCGagcacGCGCGCCucuGCCa -3'
miRNA:   3'- -CGG-GCGCu-CGCGCc----CGCGCGGc--UGGc -5'
29383 3' -66.6 NC_006151.1 + 75867 0.66 0.461141
Target:  5'- cGCCCcuGCGuguccGCGUGGGUcauGCGCgCGACgGc -3'
miRNA:   3'- -CGGG--CGCu----CGCGCCCG---CGCG-GCUGgC- -5'
29383 3' -66.6 NC_006151.1 + 87622 0.66 0.461141
Target:  5'- gGCCUGCcAGCGCG---GCGCCGACa- -3'
miRNA:   3'- -CGGGCGcUCGCGCccgCGCGGCUGgc -5'
29383 3' -66.6 NC_006151.1 + 96176 0.66 0.461141
Target:  5'- cGUCCGagccgcagagcaCGAGCGCcauGGgGCGCCGcgucGCCGu -3'
miRNA:   3'- -CGGGC------------GCUCGCGc--CCgCGCGGC----UGGC- -5'
29383 3' -66.6 NC_006151.1 + 139792 0.66 0.461141
Target:  5'- cGUCUGUcggaGAGCGC--GCGCGCCG-CCGu -3'
miRNA:   3'- -CGGGCG----CUCGCGccCGCGCGGCuGGC- -5'
29383 3' -66.6 NC_006151.1 + 126139 0.66 0.461141
Target:  5'- cGCUCGCcaucGGGCuGCuGGUGCugGCCGGCCu -3'
miRNA:   3'- -CGGGCG----CUCG-CGcCCGCG--CGGCUGGc -5'
29383 3' -66.6 NC_006151.1 + 26968 0.66 0.461141
Target:  5'- aGCUCGCGcAGCGCgcugcgcagcgGGGCGCucuGCuCGGgCGa -3'
miRNA:   3'- -CGGGCGC-UCGCG-----------CCCGCG---CG-GCUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.