miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 86505 0.66 0.859938
Target:  5'- --gGGCGGCGCguGGGcaccauCGUGGUGUa -3'
miRNA:   3'- acgUCGCCGCGguCUUu-----GUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 58416 0.66 0.859938
Target:  5'- cGCAGCugGGCGUgCGGcAGCcacgccucgGUGGCGUGc -3'
miRNA:   3'- aCGUCG--CCGCG-GUCuUUG---------UACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 106675 0.66 0.859938
Target:  5'- gGCcGCGGCGCuCGGcgcGCcgGGCGc- -3'
miRNA:   3'- aCGuCGCCGCG-GUCuu-UGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 111312 0.66 0.859938
Target:  5'- cGCGGCGGcCGCguGcccGGGCAcgGGCGa- -3'
miRNA:   3'- aCGUCGCC-GCGguC---UUUGUa-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 113310 0.66 0.859938
Target:  5'- cGCGGUGGaCGCCAcgcuGggGCccgugcUGGCGcUGg -3'
miRNA:   3'- aCGUCGCC-GCGGU----CuuUGu-----ACCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 133157 0.66 0.835766
Target:  5'- gGCGGCGGCGCg--------GGCGUGg -3'
miRNA:   3'- aCGUCGCCGCGgucuuuguaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 130739 0.66 0.835766
Target:  5'- cGCGGCGcaGCGCCAcccacGAcGGCAUGGCc-- -3'
miRNA:   3'- aCGUCGC--CGCGGU-----CU-UUGUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 98336 0.67 0.818691
Target:  5'- gGCcGCGG-GCCGcGAGACGcccgcgGGCGUGc -3'
miRNA:   3'- aCGuCGCCgCGGU-CUUUGUa-----CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 99339 0.67 0.818691
Target:  5'- cGCAGCGcGcCGUCGGcuGCAcGGCGg- -3'
miRNA:   3'- aCGUCGC-C-GCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 133388 0.67 0.818691
Target:  5'- cGgGGCGGCgGCCGGGgccgAGCG-GGCGg- -3'
miRNA:   3'- aCgUCGCCG-CGGUCU----UUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 17913 0.67 0.822164
Target:  5'- cGCGGCGGCGCU-GAucgcgacgcccaucaGGCAgcggcGGCGUc -3'
miRNA:   3'- aCGUCGCCGCGGuCU---------------UUGUa----CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 21489 0.66 0.82732
Target:  5'- gGCAgGCGGC-CgGGggGCGcgGGCGUc -3'
miRNA:   3'- aCGU-CGCCGcGgUCuuUGUa-CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 84918 0.66 0.82732
Target:  5'- cGCGcGCGGCGCCGccucc--GGCGUGc -3'
miRNA:   3'- aCGU-CGCCGCGGUcuuuguaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 40565 0.66 0.82732
Target:  5'- aGCGGCGGCGgCGGccGC--GGCGg- -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 67646 0.66 0.82732
Target:  5'- cGCA-CGGCGuCCAGGAACAgcacGCGg- -3'
miRNA:   3'- aCGUcGCCGC-GGUCUUUGUac--CGCac -5'
29383 5' -56.7 NC_006151.1 + 130594 0.66 0.82732
Target:  5'- gUGCAGCGGCaCCAGcgccuccCA-GGCGUc -3'
miRNA:   3'- -ACGUCGCCGcGGUCuuu----GUaCCGCAc -5'
29383 5' -56.7 NC_006151.1 + 73604 0.66 0.82732
Target:  5'- gUGCAGCuGGCGCCGc-AGC-UGGUGg- -3'
miRNA:   3'- -ACGUCG-CCGCGGUcuUUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 98008 0.66 0.835766
Target:  5'- cGCguaGGCGGCGCCGGccagguccgcGGgGUGGCGc- -3'
miRNA:   3'- aCG---UCGCCGCGGUCu---------UUgUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 99984 0.66 0.835766
Target:  5'- cGUGGCGGCGCUggcgcgcgaGGAccuGACgGUGGCGc- -3'
miRNA:   3'- aCGUCGCCGCGG---------UCU---UUG-UACCGCac -5'
29383 5' -56.7 NC_006151.1 + 127491 0.66 0.835766
Target:  5'- cGCGGaccccGCGCCGGAAGC-UGGUGc- -3'
miRNA:   3'- aCGUCgc---CGCGGUCUUUGuACCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.