miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 31697 0.7 0.642524
Target:  5'- aGcCGGCcgcgccauugGGCGCCGGGcggAACggGGCGUGg -3'
miRNA:   3'- aC-GUCG----------CCGCGGUCU---UUGuaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 36373 0.68 0.763581
Target:  5'- cGCAGCGGCagagGCCGGGGccCccGGCGg- -3'
miRNA:   3'- aCGUCGCCG----CGGUCUUu-GuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 36644 0.67 0.773119
Target:  5'- gGCGGCGGCGCCcccuccgccggaGGGGACcgcGGuCGUc -3'
miRNA:   3'- aCGUCGCCGCGG------------UCUUUGua-CC-GCAc -5'
29383 5' -56.7 NC_006151.1 + 37406 0.71 0.56011
Target:  5'- -aCGGCGGCGCCGGGGACucccGCGa- -3'
miRNA:   3'- acGUCGCCGCGGUCUUUGuac-CGCac -5'
29383 5' -56.7 NC_006151.1 + 38381 0.7 0.632168
Target:  5'- aGCGcCGGCGCCGGcgGCGgcgGGCGc- -3'
miRNA:   3'- aCGUcGCCGCGGUCuuUGUa--CCGCac -5'
29383 5' -56.7 NC_006151.1 + 40531 0.77 0.283641
Target:  5'- cUGCGGCGGCGgCGGAG--GUGGCGg- -3'
miRNA:   3'- -ACGUCGCCGCgGUCUUugUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 40565 0.66 0.82732
Target:  5'- aGCGGCGGCGgCGGccGC--GGCGg- -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 44200 0.67 0.782528
Target:  5'- gGCGGCGGCGggAGAugGugAUGGUGg- -3'
miRNA:   3'- aCGUCGCCGCggUCU--UugUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 44394 0.69 0.683778
Target:  5'- cGCGGgGGCGCCgaGGAGGgAgggGcGCGUGu -3'
miRNA:   3'- aCGUCgCCGCGG--UCUUUgUa--C-CGCAC- -5'
29383 5' -56.7 NC_006151.1 + 44897 0.67 0.818691
Target:  5'- gUGCGGUGGUGUguGugcGCGagaggGGCGUGu -3'
miRNA:   3'- -ACGUCGCCGCGguCuu-UGUa----CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 53749 0.69 0.704179
Target:  5'- cGUAGCGGCucgaguacgccGCCGaGAGCuUGGCGUa -3'
miRNA:   3'- aCGUCGCCG-----------CGGUcUUUGuACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 53972 0.73 0.461903
Target:  5'- gGCGGCGGCGCCucc-GCG-GGCGUc -3'
miRNA:   3'- aCGUCGCCGCGGucuuUGUaCCGCAc -5'
29383 5' -56.7 NC_006151.1 + 54404 0.71 0.56011
Target:  5'- cGCGGCcucGGCGCC-GAGGCGcUGGCGc- -3'
miRNA:   3'- aCGUCG---CCGCGGuCUUUGU-ACCGCac -5'
29383 5' -56.7 NC_006151.1 + 54642 0.73 0.434204
Target:  5'- aGCGGCGGCGCgAGcgcuGCGUGGaCGa- -3'
miRNA:   3'- aCGUCGCCGCGgUCuu--UGUACC-GCac -5'
29383 5' -56.7 NC_006151.1 + 54914 0.67 0.773119
Target:  5'- cGCAGCGcGUGCaCGGcGAgGugcUGGCGUGc -3'
miRNA:   3'- aCGUCGC-CGCG-GUCuUUgU---ACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 57110 0.67 0.800923
Target:  5'- aGCAGCGcGCGCCGccgcGCccGGCGg- -3'
miRNA:   3'- aCGUCGC-CGCGGUcuu-UGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 57175 0.66 0.852082
Target:  5'- gGC-GCGGC-CCAGAAGuCggGGuCGUGg -3'
miRNA:   3'- aCGuCGCCGcGGUCUUU-GuaCC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 58323 0.67 0.773119
Target:  5'- aGCGGCGGCgcGCCGGccuccGCGUaGGCGc- -3'
miRNA:   3'- aCGUCGCCG--CGGUCuu---UGUA-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 58416 0.66 0.859938
Target:  5'- cGCAGCugGGCGUgCGGcAGCcacgccucgGUGGCGUGc -3'
miRNA:   3'- aCGUCG--CCGCG-GUCuUUG---------UACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 58629 0.7 0.646665
Target:  5'- cGCAGCGGCucguagaaggccagcGCCGGGAggGCGcGGCGc- -3'
miRNA:   3'- aCGUCGCCG---------------CGGUCUU--UGUaCCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.