miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 103962 0.68 0.734289
Target:  5'- cGCGGC-GCGCCAGc-GCGUcGGCGa- -3'
miRNA:   3'- aCGUCGcCGCGGUCuuUGUA-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 103765 0.67 0.800923
Target:  5'- cGCcGCGGCGCUGcgcgagucGGAGCGcUGGCGg- -3'
miRNA:   3'- aCGuCGCCGCGGU--------CUUUGU-ACCGCac -5'
29383 5' -56.7 NC_006151.1 + 103639 0.74 0.415399
Target:  5'- gGCGGCGGCGCUGGcggacgcGGACAcGGCGg- -3'
miRNA:   3'- aCGUCGCCGCGGUC-------UUUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 102689 0.69 0.694005
Target:  5'- cGCGGgGGCGCCcGgcGCG-GGCGg- -3'
miRNA:   3'- aCGUCgCCGCGGuCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 101913 0.7 0.621812
Target:  5'- aUGCccaAGCGGCGCCGGccccCGUGGCc-- -3'
miRNA:   3'- -ACG---UCGCCGCGGUCuuu-GUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 100425 0.69 0.694005
Target:  5'- cGCGGgGGCGCU----GCGcGGCGUGa -3'
miRNA:   3'- aCGUCgCCGCGGucuuUGUaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 99984 0.66 0.835766
Target:  5'- cGUGGCGGCGCUggcgcgcgaGGAccuGACgGUGGCGc- -3'
miRNA:   3'- aCGUCGCCGCGG---------UCU---UUG-UACCGCac -5'
29383 5' -56.7 NC_006151.1 + 99473 0.7 0.619741
Target:  5'- gUGaCGGCGGCGCU-GggGCuccccgagaagGGCGUGg -3'
miRNA:   3'- -AC-GUCGCCGCGGuCuuUGua---------CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 99339 0.67 0.818691
Target:  5'- cGCAGCGcGcCGUCGGcuGCAcGGCGg- -3'
miRNA:   3'- aCGUCGC-C-GCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 99091 0.67 0.782528
Target:  5'- gGC-GCGGCGCCuGcgcacGGACcagGGCGUGc -3'
miRNA:   3'- aCGuCGCCGCGGuC-----UUUGua-CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 98950 0.66 0.852082
Target:  5'- gGCGGCGcGgGCCGuGGACGaGGCGg- -3'
miRNA:   3'- aCGUCGC-CgCGGUcUUUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 98336 0.67 0.818691
Target:  5'- gGCcGCGG-GCCGcGAGACGcccgcgGGCGUGc -3'
miRNA:   3'- aCGuCGCCgCGGU-CUUUGUa-----CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 98008 0.66 0.835766
Target:  5'- cGCguaGGCGGCGCCGGccagguccgcGGgGUGGCGc- -3'
miRNA:   3'- aCG---UCGCCGCGGUCu---------UUgUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 97980 0.68 0.71429
Target:  5'- cGCGGUGGUucuuGCCGGGcGGCGUGGCc-- -3'
miRNA:   3'- aCGUCGCCG----CGGUCU-UUGUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 97743 0.7 0.601132
Target:  5'- aGCGcGCGGUGCgGGAAcACGUGGCu-- -3'
miRNA:   3'- aCGU-CGCCGCGgUCUU-UGUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 97364 0.75 0.357278
Target:  5'- cGCGGCGGCGgCGGgcGCGgcgggGGCGUc -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGUa----CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 96876 0.66 0.863022
Target:  5'- cGCGGC-GCGCgCGGggGCAUgaugggaugugucugGGCGg- -3'
miRNA:   3'- aCGUCGcCGCG-GUCuuUGUA---------------CCGCac -5'
29383 5' -56.7 NC_006151.1 + 96735 0.72 0.519901
Target:  5'- gGCGGCgGGCGCgacgaCGGAGGcCAUGGCGg- -3'
miRNA:   3'- aCGUCG-CCGCG-----GUCUUU-GUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 96687 0.71 0.564182
Target:  5'- gGCGGCGucgaggaaugcguccGCGCCGGggGCGgcGGCGg- -3'
miRNA:   3'- aCGUCGC---------------CGCGGUCuuUGUa-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 96587 0.7 0.611464
Target:  5'- cGCGGCgcgaGGCGCCGGgcGCG-GGCGc- -3'
miRNA:   3'- aCGUCG----CCGCGGUCuuUGUaCCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.