miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 96388 0.7 0.652872
Target:  5'- cGCGcGCGGUGCCGGc-GCAcGGCGg- -3'
miRNA:   3'- aCGU-CGCCGCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 95626 0.67 0.791799
Target:  5'- gUGCAGCGaG-GCCAGguGCGaGGCGc- -3'
miRNA:   3'- -ACGUCGC-CgCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 94052 0.67 0.800923
Target:  5'- cGCGGCGuCGCCGcGGAACAgcaucagcuggaUGGCGcUGu -3'
miRNA:   3'- aCGUCGCcGCGGU-CUUUGU------------ACCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 92141 0.68 0.71429
Target:  5'- cGCGcGCGGCGCCAaGGccauCAUGGCc-- -3'
miRNA:   3'- aCGU-CGCCGCGGU-CUuu--GUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 91304 0.68 0.734289
Target:  5'- aGCAGCcGCGCCGGGAA---GGCGc- -3'
miRNA:   3'- aCGUCGcCGCGGUCUUUguaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 91026 0.67 0.818691
Target:  5'- cGCGGuCGcGCGCCGGGAAgGUcacgaccccGGCGcUGg -3'
miRNA:   3'- aCGUC-GC-CGCGGUCUUUgUA---------CCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 90740 0.78 0.24552
Target:  5'- gGCGGCGGCGCCcucGGggGCGgcgGGCacgGUGg -3'
miRNA:   3'- aCGUCGCCGCGG---UCuuUGUa--CCG---CAC- -5'
29383 5' -56.7 NC_006151.1 + 89949 0.68 0.763581
Target:  5'- cGCgGGCGcG-GCCAGGAACcgGGCGc- -3'
miRNA:   3'- aCG-UCGC-CgCGGUCUUUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 89717 0.67 0.809
Target:  5'- -cCGGCGGCGCCGGccGCggccgcgGUGGUGg- -3'
miRNA:   3'- acGUCGCCGCGGUCuuUG-------UACCGCac -5'
29383 5' -56.7 NC_006151.1 + 89488 0.74 0.425187
Target:  5'- cGCGGCGGCgaGCCGGuacGCGcgGGUGUGg -3'
miRNA:   3'- aCGUCGCCG--CGGUCuu-UGUa-CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 88184 0.67 0.818691
Target:  5'- gGUAGaCGGUGUCGGcgGCGUGGuCGg- -3'
miRNA:   3'- aCGUC-GCCGCGGUCuuUGUACC-GCac -5'
29383 5' -56.7 NC_006151.1 + 86726 0.7 0.632168
Target:  5'- cGCGGCGcGcCGCCGcGAGGCc-GGCGUGc -3'
miRNA:   3'- aCGUCGC-C-GCGGU-CUUUGuaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 86505 0.66 0.859938
Target:  5'- --gGGCGGCGCguGGGcaccauCGUGGUGUa -3'
miRNA:   3'- acgUCGCCGCGguCUUu-----GUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 85970 0.66 0.852082
Target:  5'- cGCGGCGgacaaGCGCCucGGGCAguuUGGCGUc -3'
miRNA:   3'- aCGUCGC-----CGCGGucUUUGU---ACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 84918 0.66 0.82732
Target:  5'- cGCGcGCGGCGCCGccucc--GGCGUGc -3'
miRNA:   3'- aCGU-CGCCGCGGUcuuuguaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 84781 0.68 0.72433
Target:  5'- cGCGGCGcGCGCCgccgaGGAGGCGcccgaGGCGa- -3'
miRNA:   3'- aCGUCGC-CGCGG-----UCUUUGUa----CCGCac -5'
29383 5' -56.7 NC_006151.1 + 84631 0.67 0.782528
Target:  5'- cGCcGCGGCGCUGGAcaacgcCAUGGCc-- -3'
miRNA:   3'- aCGuCGCCGCGGUCUuu----GUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 84376 0.72 0.519901
Target:  5'- cGCGaucGCGGCGCgCGGGGACG-GGCGg- -3'
miRNA:   3'- aCGU---CGCCGCG-GUCUUUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 83263 0.68 0.767411
Target:  5'- cGcCAGCGGCGCCccgagcucagguagcGcGAcguguugaccAGCAUGGCGUa -3'
miRNA:   3'- aC-GUCGCCGCGG---------------U-CU----------UUGUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 83004 0.66 0.859938
Target:  5'- gGCcGCGGCG-CAGAcGCGcGGCGa- -3'
miRNA:   3'- aCGuCGCCGCgGUCUuUGUaCCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.