miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 59422 0.77 0.257733
Target:  5'- aGCAGCGGCGCCAGcucGGCGUcGGCc-- -3'
miRNA:   3'- aCGUCGCCGCGGUCu--UUGUA-CCGcac -5'
29383 5' -56.7 NC_006151.1 + 60112 0.7 0.642524
Target:  5'- gGCAGCGGCGCU-GGAAC-UGcGCGc- -3'
miRNA:   3'- aCGUCGCCGCGGuCUUUGuAC-CGCac -5'
29383 5' -56.7 NC_006151.1 + 60748 0.72 0.519901
Target:  5'- gGCAGCGGCGgCucgcGAAGgcgguCGUGGCGUa -3'
miRNA:   3'- aCGUCGCCGCgGu---CUUU-----GUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 61778 0.69 0.663202
Target:  5'- gUGCuGCGGCGCgAGGccggccGGC-UGGCGUu -3'
miRNA:   3'- -ACGuCGCCGCGgUCU------UUGuACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 63485 0.76 0.29735
Target:  5'- gGCGGCGGCGCCcGAAGaagGUGGCcagGUGg -3'
miRNA:   3'- aCGUCGCCGCGGuCUUUg--UACCG---CAC- -5'
29383 5' -56.7 NC_006151.1 + 64008 0.69 0.673508
Target:  5'- cGguGCGGCGCCAGgcGCccGaucGCGUc -3'
miRNA:   3'- aCguCGCCGCGGUCuuUGuaC---CGCAc -5'
29383 5' -56.7 NC_006151.1 + 64535 0.71 0.549966
Target:  5'- cGCGGCcGCGUCGGggGCGgcgaGGcCGUGg -3'
miRNA:   3'- aCGUCGcCGCGGUCuuUGUa---CC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 64610 0.69 0.672478
Target:  5'- cGcCAGCGGCGCCGcgccgccggccgcGggGCGcGGCGc- -3'
miRNA:   3'- aC-GUCGCCGCGGU-------------CuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 64753 0.67 0.80989
Target:  5'- aGCAGCGGgGCCAc---CGUGcGCGg- -3'
miRNA:   3'- aCGUCGCCgCGGUcuuuGUAC-CGCac -5'
29383 5' -56.7 NC_006151.1 + 64906 0.68 0.71429
Target:  5'- cGCAGCGGCGCgc-GAGCAccuccacGGCGUa -3'
miRNA:   3'- aCGUCGCCGCGgucUUUGUa------CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 65460 0.75 0.36534
Target:  5'- cGCAGCGGCGCCgAGAGuccCAUcaGGCGc- -3'
miRNA:   3'- aCGUCGCCGCGG-UCUUu--GUA--CCGCac -5'
29383 5' -56.7 NC_006151.1 + 66795 0.71 0.580545
Target:  5'- gGCGGCGGCGgggcCCGGGGACGacgacGGCGa- -3'
miRNA:   3'- aCGUCGCCGC----GGUCUUUGUa----CCGCac -5'
29383 5' -56.7 NC_006151.1 + 67646 0.66 0.82732
Target:  5'- cGCA-CGGCGuCCAGGAACAgcacGCGg- -3'
miRNA:   3'- aCGUcGCCGC-GGUCUUUGUac--CGCac -5'
29383 5' -56.7 NC_006151.1 + 67730 0.67 0.800923
Target:  5'- gGC-GCGGCGCaCAGGcacGGCGcGGCGg- -3'
miRNA:   3'- aCGuCGCCGCG-GUCU---UUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 68014 0.67 0.800923
Target:  5'- gGCucGGCGGCGuCCAGGucCA-GGCGg- -3'
miRNA:   3'- aCG--UCGCCGC-GGUCUuuGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 68216 0.66 0.844023
Target:  5'- aGCGGCccuGCGCCAGgcGCAgcgcccgcgGGCGc- -3'
miRNA:   3'- aCGUCGc--CGCGGUCuuUGUa--------CCGCac -5'
29383 5' -56.7 NC_006151.1 + 68274 0.69 0.683778
Target:  5'- gGUcGCGGCGCCGGgcGCcacGGCGg- -3'
miRNA:   3'- aCGuCGCCGCGGUCuuUGua-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 69059 0.67 0.773119
Target:  5'- gGCAGCGGCGgcuccucgucccCCAGcgGCAcggccagcucGGCGUGc -3'
miRNA:   3'- aCGUCGCCGC------------GGUCuuUGUa---------CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 69282 0.68 0.753924
Target:  5'- aGUGGCGGCGCgccacCAGGGACAcgGGCc-- -3'
miRNA:   3'- aCGUCGCCGCG-----GUCUUUGUa-CCGcac -5'
29383 5' -56.7 NC_006151.1 + 71777 0.68 0.712273
Target:  5'- gGCAGCGGCGgCGGggGCugccgcaccagcUGGCc-- -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGu-----------ACCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.