miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 72745 0.67 0.782528
Target:  5'- cGCAGCaGCGCCgAGucGC-UGGCGc- -3'
miRNA:   3'- aCGUCGcCGCGG-UCuuUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 72872 0.67 0.818691
Target:  5'- gGCGGCGGCGCCcGuguc--GGCGaUGa -3'
miRNA:   3'- aCGUCGCCGCGGuCuuuguaCCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 73040 0.71 0.570305
Target:  5'- gGCGGUGGCGCggugggggugcgCGGGGuccGCGUGGCuGUGg -3'
miRNA:   3'- aCGUCGCCGCG------------GUCUU---UGUACCG-CAC- -5'
29383 5' -56.7 NC_006151.1 + 73329 0.7 0.652872
Target:  5'- gGCGG-GGCGCCGc--GCGUGGCGa- -3'
miRNA:   3'- aCGUCgCCGCGGUcuuUGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 73604 0.66 0.82732
Target:  5'- gUGCAGCuGGCGCCGc-AGC-UGGUGg- -3'
miRNA:   3'- -ACGUCG-CCGCGGUcuUUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 73787 0.67 0.772171
Target:  5'- gGCGGCGGCGCgCAccucggcgcccacGucgcGCAUGGCGc- -3'
miRNA:   3'- aCGUCGCCGCG-GU-------------Cuu--UGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 74140 0.66 0.844023
Target:  5'- gUGCAGCgGGUGCCGGggGuCGUc-CGUGc -3'
miRNA:   3'- -ACGUCG-CCGCGGUCuuU-GUAccGCAC- -5'
29383 5' -56.7 NC_006151.1 + 74512 0.68 0.734289
Target:  5'- --gAGCGGgGgCAGcAGCGUGGCGUc -3'
miRNA:   3'- acgUCGCCgCgGUCuUUGUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 75280 0.74 0.425187
Target:  5'- cGCAGCGcCGCCA---GCGUGGCGUc -3'
miRNA:   3'- aCGUCGCcGCGGUcuuUGUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 75314 0.68 0.744156
Target:  5'- aGgAGgGGUGgCAGAGGgugccCAUGGCGUGc -3'
miRNA:   3'- aCgUCgCCGCgGUCUUU-----GUACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 75403 0.67 0.791799
Target:  5'- gGguGCGuGCGCggguccgGGAGGCccGGCGUGg -3'
miRNA:   3'- aCguCGC-CGCGg------UCUUUGuaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 78578 0.67 0.800923
Target:  5'- cGCGGCGacGgGCCuGGAGC-UGGCGg- -3'
miRNA:   3'- aCGUCGC--CgCGGuCUUUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 81211 0.67 0.782528
Target:  5'- cGCAGUccgGGCGCCGGcgcguGAACAcgaagcUGGCGc- -3'
miRNA:   3'- aCGUCG---CCGCGGUC-----UUUGU------ACCGCac -5'
29383 5' -56.7 NC_006151.1 + 81392 0.7 0.601132
Target:  5'- cGCcGCGGCGcCCAGGuuGGCcaggGUGGCGUc -3'
miRNA:   3'- aCGuCGCCGC-GGUCU--UUG----UACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 81539 0.75 0.373526
Target:  5'- cGCGGCGGCGCgcuccgCGGugcACAUGGcCGUGg -3'
miRNA:   3'- aCGUCGCCGCG------GUCuu-UGUACC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 82739 0.7 0.641489
Target:  5'- cGCAGCgggaGGCGCaCGGAcgacgcgGGCAUGGUGa- -3'
miRNA:   3'- aCGUCG----CCGCG-GUCU-------UUGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 83004 0.66 0.859938
Target:  5'- gGCcGCGGCG-CAGAcGCGcGGCGa- -3'
miRNA:   3'- aCGuCGCCGCgGUCUuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 83263 0.68 0.767411
Target:  5'- cGcCAGCGGCGCCccgagcucagguagcGcGAcguguugaccAGCAUGGCGUa -3'
miRNA:   3'- aC-GUCGCCGCGG---------------U-CU----------UUGUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 84376 0.72 0.519901
Target:  5'- cGCGaucGCGGCGCgCGGGGACG-GGCGg- -3'
miRNA:   3'- aCGU---CGCCGCG-GUCUUUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 84631 0.67 0.782528
Target:  5'- cGCcGCGGCGCUGGAcaacgcCAUGGCc-- -3'
miRNA:   3'- aCGuCGCCGCGGUCUuu----GUACCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.