miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 71777 0.68 0.712273
Target:  5'- gGCAGCGGCGgCGGggGCugccgcaccagcUGGCc-- -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGu-----------ACCGcac -5'
29383 5' -56.7 NC_006151.1 + 18824 0.68 0.711264
Target:  5'- cGCGGUGGCGacgagcguguagucCCAGGuggcGACGUGGCcguuGUGg -3'
miRNA:   3'- aCGUCGCCGC--------------GGUCU----UUGUACCG----CAC- -5'
29383 5' -56.7 NC_006151.1 + 91304 0.68 0.734289
Target:  5'- aGCAGCcGCGCCGGGAA---GGCGc- -3'
miRNA:   3'- aCGUCGcCGCGGUCUUUguaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 103962 0.68 0.734289
Target:  5'- cGCGGC-GCGCCAGc-GCGUcGGCGa- -3'
miRNA:   3'- aCGUCGcCGCGGUCuuUGUA-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 75314 0.68 0.744156
Target:  5'- aGgAGgGGUGgCAGAGGgugccCAUGGCGUGc -3'
miRNA:   3'- aCgUCgCCGCgGUCUUU-----GUACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 118176 0.68 0.767411
Target:  5'- cGCGGCcugaccgucgaggccGGCuucGCCGGgcACGUGGcCGUGg -3'
miRNA:   3'- aCGUCG---------------CCG---CGGUCuuUGUACC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 83263 0.68 0.767411
Target:  5'- cGcCAGCGGCGCCccgagcucagguagcGcGAcguguugaccAGCAUGGCGUa -3'
miRNA:   3'- aC-GUCGCCGCGG---------------U-CU----------UUGUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 123219 0.68 0.763581
Target:  5'- gGCGGUGGcCGCCGGGuuccgcGCAcGGCGc- -3'
miRNA:   3'- aCGUCGCC-GCGGUCUu-----UGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 36373 0.68 0.763581
Target:  5'- cGCAGCGGCagagGCCGGGGccCccGGCGg- -3'
miRNA:   3'- aCGUCGCCG----CGGUCUUu-GuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 3276 0.68 0.763581
Target:  5'- cGCGGCGauguGCGCCAGGgcGGCcgGGUcgaagGUGa -3'
miRNA:   3'- aCGUCGC----CGCGGUCU--UUGuaCCG-----CAC- -5'
29383 5' -56.7 NC_006151.1 + 89949 0.68 0.763581
Target:  5'- cGCgGGCGcG-GCCAGGAACcgGGCGc- -3'
miRNA:   3'- aCG-UCGC-CgCGGUCUUUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 69282 0.68 0.753924
Target:  5'- aGUGGCGGCGCgccacCAGGGACAcgGGCc-- -3'
miRNA:   3'- aCGUCGCCGCG-----GUCUUUGUa-CCGcac -5'
29383 5' -56.7 NC_006151.1 + 21611 0.68 0.752952
Target:  5'- gGCGGCGGCGUaggcccgCGGGAGCGUccGGcCGUu -3'
miRNA:   3'- aCGUCGCCGCG-------GUCUUUGUA--CC-GCAc -5'
29383 5' -56.7 NC_006151.1 + 30865 0.68 0.744156
Target:  5'- gGCGGCGGCGgCGGAGGag-GGgGg- -3'
miRNA:   3'- aCGUCGCCGCgGUCUUUguaCCgCac -5'
29383 5' -56.7 NC_006151.1 + 4569 0.68 0.744156
Target:  5'- gGCAGCGGCggggucacgcuGCCggugaugaAGGAGcCGUGGcCGUGg -3'
miRNA:   3'- aCGUCGCCG-----------CGG--------UCUUU-GUACC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 27453 0.69 0.694005
Target:  5'- cGCGGUGG-GUCGGggGCG-GGCGg- -3'
miRNA:   3'- aCGUCGCCgCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 100425 0.69 0.694005
Target:  5'- cGCGGgGGCGCU----GCGcGGCGUGa -3'
miRNA:   3'- aCGUCgCCGCGGucuuUGUaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 102689 0.69 0.694005
Target:  5'- cGCGGgGGCGCCcGgcGCG-GGCGg- -3'
miRNA:   3'- aCGUCgCCGCGGuCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 122965 0.69 0.694005
Target:  5'- gGC-GCGGaCGCCGGcGACGggGGCGUc -3'
miRNA:   3'- aCGuCGCC-GCGGUCuUUGUa-CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 133352 0.69 0.683778
Target:  5'- cGCGGCGGCGgUGGuGGugGUGGUGgUGg -3'
miRNA:   3'- aCGUCGCCGCgGUC-UUugUACCGC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.