miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 17135 0.67 0.818691
Target:  5'- cUGCGGgaGGCgGCCAGGAGCAccUGGUc-- -3'
miRNA:   3'- -ACGUCg-CCG-CGGUCUUUGU--ACCGcac -5'
29383 5' -56.7 NC_006151.1 + 22531 0.67 0.815191
Target:  5'- aGUcgGGCGGgGCCGGGucaggcggaggccACGUGGCGg- -3'
miRNA:   3'- aCG--UCGCCgCGGUCUu------------UGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 67730 0.67 0.800923
Target:  5'- gGC-GCGGCGCaCAGGcacGGCGcGGCGg- -3'
miRNA:   3'- aCGuCGCCGCG-GUCU---UUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 68014 0.67 0.800923
Target:  5'- gGCucGGCGGCGuCCAGGucCA-GGCGg- -3'
miRNA:   3'- aCG--UCGCCGC-GGUCUuuGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 78578 0.67 0.800923
Target:  5'- cGCGGCGacGgGCCuGGAGC-UGGCGg- -3'
miRNA:   3'- aCGUCGC--CgCGGuCUUUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 94052 0.67 0.800923
Target:  5'- cGCGGCGuCGCCGcGGAACAgcaucagcuggaUGGCGcUGu -3'
miRNA:   3'- aCGUCGCcGCGGU-CUUUGU------------ACCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 103765 0.67 0.800923
Target:  5'- cGCcGCGGCGCUGcgcgagucGGAGCGcUGGCGg- -3'
miRNA:   3'- aCGuCGCCGCGGU--------CUUUGU-ACCGCac -5'
29383 5' -56.7 NC_006151.1 + 115388 0.67 0.800923
Target:  5'- aGCAGCaGGCGCCGGAAggucuucucGCAcucgagcuugaUGGgGg- -3'
miRNA:   3'- aCGUCG-CCGCGGUCUU---------UGU-----------ACCgCac -5'
29383 5' -56.7 NC_006151.1 + 128617 0.67 0.800923
Target:  5'- cGCGGCGuGCGCCcc--AgGUGGCGg- -3'
miRNA:   3'- aCGUCGC-CGCGGucuuUgUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 139736 0.67 0.808109
Target:  5'- aGCGGCGGCGacaGGAGGCGgaucguccggacGGCGg- -3'
miRNA:   3'- aCGUCGCCGCgg-UCUUUGUa-----------CCGCac -5'
29383 5' -56.7 NC_006151.1 + 89717 0.67 0.809
Target:  5'- -cCGGCGGCGCCGGccGCggccgcgGUGGUGg- -3'
miRNA:   3'- acGUCGCCGCGGUCuuUG-------UACCGCac -5'
29383 5' -56.7 NC_006151.1 + 64753 0.67 0.80989
Target:  5'- aGCAGCGGgGCCAc---CGUGcGCGg- -3'
miRNA:   3'- aCGUCGCCgCGGUcuuuGUAC-CGCac -5'
29383 5' -56.7 NC_006151.1 + 21611 0.68 0.752952
Target:  5'- gGCGGCGGCGUaggcccgCGGGAGCGUccGGcCGUu -3'
miRNA:   3'- aCGUCGCCGCG-------GUCUUUGUA--CC-GCAc -5'
29383 5' -56.7 NC_006151.1 + 69282 0.68 0.753924
Target:  5'- aGUGGCGGCGCgccacCAGGGACAcgGGCc-- -3'
miRNA:   3'- aCGUCGCCGCG-----GUCUUUGUa-CCGcac -5'
29383 5' -56.7 NC_006151.1 + 89949 0.68 0.763581
Target:  5'- cGCgGGCGcG-GCCAGGAACcgGGCGc- -3'
miRNA:   3'- aCG-UCGC-CgCGGUCUUUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 3276 0.68 0.763581
Target:  5'- cGCGGCGauguGCGCCAGGgcGGCcgGGUcgaagGUGa -3'
miRNA:   3'- aCGUCGC----CGCGGUCU--UUGuaCCG-----CAC- -5'
29383 5' -56.7 NC_006151.1 + 36373 0.68 0.763581
Target:  5'- cGCAGCGGCagagGCCGGGGccCccGGCGg- -3'
miRNA:   3'- aCGUCGCCG----CGGUCUUu-GuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 123219 0.68 0.763581
Target:  5'- gGCGGUGGcCGCCGGGuuccgcGCAcGGCGc- -3'
miRNA:   3'- aCGUCGCC-GCGGUCUu-----UGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 83263 0.68 0.767411
Target:  5'- cGcCAGCGGCGCCccgagcucagguagcGcGAcguguugaccAGCAUGGCGUa -3'
miRNA:   3'- aC-GUCGCCGCGG---------------U-CU----------UUGUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 30865 0.68 0.744156
Target:  5'- gGCGGCGGCGgCGGAGGag-GGgGg- -3'
miRNA:   3'- aCGUCGCCGCgGUCUUUguaCCgCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.