miRNA display CGI


Results 61 - 80 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 21974 0.7 0.649769
Target:  5'- gUGguGCGGCGCCGGcAGCGcccaaagaucugccUGGgGUc -3'
miRNA:   3'- -ACguCGCCGCGGUCuUUGU--------------ACCgCAc -5'
29383 5' -56.7 NC_006151.1 + 20323 0.7 0.652872
Target:  5'- gGCGGCGGCGagCAGGacgcgcgacacGACGcUGGCGUu -3'
miRNA:   3'- aCGUCGCCGCg-GUCU-----------UUGU-ACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 16978 0.7 0.652872
Target:  5'- gGC-GUGGCGCCAGGAGCG-GuuGUGg -3'
miRNA:   3'- aCGuCGCCGCGGUCUUUGUaCcgCAC- -5'
29383 5' -56.7 NC_006151.1 + 4279 0.7 0.652872
Target:  5'- cGCcGCGGCagGCCAGGAcGCA-GGCGUc -3'
miRNA:   3'- aCGuCGCCG--CGGUCUU-UGUaCCGCAc -5'
29383 5' -56.7 NC_006151.1 + 4081 0.7 0.652872
Target:  5'- -cCAGCGGCGCCAcGguGCG-GGCGa- -3'
miRNA:   3'- acGUCGCCGCGGU-CuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 96388 0.7 0.652872
Target:  5'- cGCGcGCGGUGCCGGc-GCAcGGCGg- -3'
miRNA:   3'- aCGU-CGCCGCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 73329 0.7 0.652872
Target:  5'- gGCGG-GGCGCCGc--GCGUGGCGa- -3'
miRNA:   3'- aCGUCgCCGCGGUcuuUGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 61778 0.69 0.663202
Target:  5'- gUGCuGCGGCGCgAGGccggccGGC-UGGCGUu -3'
miRNA:   3'- -ACGuCGCCGCGgUCU------UUGuACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 21414 0.69 0.672478
Target:  5'- cGguGCGGCGUCucGGGccucgggggucgcGGCGUGGgGUGg -3'
miRNA:   3'- aCguCGCCGCGG--UCU-------------UUGUACCgCAC- -5'
29383 5' -56.7 NC_006151.1 + 64610 0.69 0.672478
Target:  5'- cGcCAGCGGCGCCGcgccgccggccgcGggGCGcGGCGc- -3'
miRNA:   3'- aC-GUCGCCGCGGU-------------CuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 132038 0.69 0.673508
Target:  5'- aGcCGGCGGCGCgCGGcAGCGcGGCGg- -3'
miRNA:   3'- aC-GUCGCCGCG-GUCuUUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 19894 0.69 0.673508
Target:  5'- gGcCAGCaGCGCCAGGAGCugcgcGGCGc- -3'
miRNA:   3'- aC-GUCGcCGCGGUCUUUGua---CCGCac -5'
29383 5' -56.7 NC_006151.1 + 64008 0.69 0.673508
Target:  5'- cGguGCGGCGCCAGgcGCccGaucGCGUc -3'
miRNA:   3'- aCguCGCCGCGGUCuuUGuaC---CGCAc -5'
29383 5' -56.7 NC_006151.1 + 68274 0.69 0.683778
Target:  5'- gGUcGCGGCGCCGGgcGCcacGGCGg- -3'
miRNA:   3'- aCGuCGCCGCGGUCuuUGua-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 133352 0.69 0.683778
Target:  5'- cGCGGCGGCGgUGGuGGugGUGGUGgUGg -3'
miRNA:   3'- aCGUCGCCGCgGUC-UUugUACCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 44394 0.69 0.683778
Target:  5'- cGCGGgGGCGCCgaGGAGGgAgggGcGCGUGu -3'
miRNA:   3'- aCGUCgCCGCGG--UCUUUgUa--C-CGCAC- -5'
29383 5' -56.7 NC_006151.1 + 102689 0.69 0.694005
Target:  5'- cGCGGgGGCGCCcGgcGCG-GGCGg- -3'
miRNA:   3'- aCGUCgCCGCGGuCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 27453 0.69 0.694005
Target:  5'- cGCGGUGG-GUCGGggGCG-GGCGg- -3'
miRNA:   3'- aCGUCGCCgCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 100425 0.69 0.694005
Target:  5'- cGCGGgGGCGCU----GCGcGGCGUGa -3'
miRNA:   3'- aCGUCgCCGCGGucuuUGUaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 122965 0.69 0.694005
Target:  5'- gGC-GCGGaCGCCGGcGACGggGGCGUc -3'
miRNA:   3'- aCGuCGCC-GCGGUCuUUGUa-CCGCAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.