miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 84631 0.67 0.782528
Target:  5'- cGCcGCGGCGCUGGAcaacgcCAUGGCc-- -3'
miRNA:   3'- aCGuCGCCGCGGUCUuu----GUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 99091 0.67 0.782528
Target:  5'- gGC-GCGGCGCCuGcgcacGGACcagGGCGUGc -3'
miRNA:   3'- aCGuCGCCGCGGuC-----UUUGua-CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 131868 0.67 0.782528
Target:  5'- cGcCGGCGGCGUCGGGucGCAgGGCa-- -3'
miRNA:   3'- aC-GUCGCCGCGGUCUu-UGUaCCGcac -5'
29383 5' -56.7 NC_006151.1 + 72745 0.67 0.782528
Target:  5'- cGCAGCaGCGCCgAGucGC-UGGCGc- -3'
miRNA:   3'- aCGUCGcCGCGG-UCuuUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 141651 0.67 0.775956
Target:  5'- cGCGGCGGgGCCccgcgggcucguuguGGAGGCAUgucugccucccacGGCGg- -3'
miRNA:   3'- aCGUCGCCgCGG---------------UCUUUGUA-------------CCGCac -5'
29383 5' -56.7 NC_006151.1 + 27287 0.67 0.773119
Target:  5'- cGUAGCGcccGCGCUugGGggGCGUGGgGg- -3'
miRNA:   3'- aCGUCGC---CGCGG--UCuuUGUACCgCac -5'
29383 5' -56.7 NC_006151.1 + 36644 0.67 0.773119
Target:  5'- gGCGGCGGCGCCcccuccgccggaGGGGACcgcGGuCGUc -3'
miRNA:   3'- aCGUCGCCGCGG------------UCUUUGua-CC-GCAc -5'
29383 5' -56.7 NC_006151.1 + 58323 0.67 0.773119
Target:  5'- aGCGGCGGCgcGCCGGccuccGCGUaGGCGc- -3'
miRNA:   3'- aCGUCGCCG--CGGUCuu---UGUA-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 69059 0.67 0.773119
Target:  5'- gGCAGCGGCGgcuccucgucccCCAGcgGCAcggccagcucGGCGUGc -3'
miRNA:   3'- aCGUCGCCGC------------GGUCuuUGUa---------CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 2684 0.67 0.773119
Target:  5'- cGCAGCGGCucgGCCccgGGguGCAggcgGGCGa- -3'
miRNA:   3'- aCGUCGCCG---CGG---UCuuUGUa---CCGCac -5'
29383 5' -56.7 NC_006151.1 + 54914 0.67 0.773119
Target:  5'- cGCAGCGcGUGCaCGGcGAgGugcUGGCGUGc -3'
miRNA:   3'- aCGUCGC-CGCG-GUCuUUgU---ACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 73787 0.67 0.772171
Target:  5'- gGCGGCGGCGCgCAccucggcgcccacGucgcGCAUGGCGc- -3'
miRNA:   3'- aCGUCGCCGCG-GU-------------Cuu--UGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 118176 0.68 0.767411
Target:  5'- cGCGGCcugaccgucgaggccGGCuucGCCGGgcACGUGGcCGUGg -3'
miRNA:   3'- aCGUCG---------------CCG---CGGUCuuUGUACC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 83263 0.68 0.767411
Target:  5'- cGcCAGCGGCGCCccgagcucagguagcGcGAcguguugaccAGCAUGGCGUa -3'
miRNA:   3'- aC-GUCGCCGCGG---------------U-CU----------UUGUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 89949 0.68 0.763581
Target:  5'- cGCgGGCGcG-GCCAGGAACcgGGCGc- -3'
miRNA:   3'- aCG-UCGC-CgCGGUCUUUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 3276 0.68 0.763581
Target:  5'- cGCGGCGauguGCGCCAGGgcGGCcgGGUcgaagGUGa -3'
miRNA:   3'- aCGUCGC----CGCGGUCU--UUGuaCCG-----CAC- -5'
29383 5' -56.7 NC_006151.1 + 36373 0.68 0.763581
Target:  5'- cGCAGCGGCagagGCCGGGGccCccGGCGg- -3'
miRNA:   3'- aCGUCGCCG----CGGUCUUu-GuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 123219 0.68 0.763581
Target:  5'- gGCGGUGGcCGCCGGGuuccgcGCAcGGCGc- -3'
miRNA:   3'- aCGUCGCC-GCGGUCUu-----UGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 69282 0.68 0.753924
Target:  5'- aGUGGCGGCGCgccacCAGGGACAcgGGCc-- -3'
miRNA:   3'- aCGUCGCCGCG-----GUCUUUGUa-CCGcac -5'
29383 5' -56.7 NC_006151.1 + 21611 0.68 0.752952
Target:  5'- gGCGGCGGCGUaggcccgCGGGAGCGUccGGcCGUu -3'
miRNA:   3'- aCGUCGCCGCG-------GUCUUUGUA--CC-GCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.