Results 41 - 60 of 176 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 67730 | 0.67 | 0.800923 |
Target: 5'- gGC-GCGGCGCaCAGGcacGGCGcGGCGg- -3' miRNA: 3'- aCGuCGCCGCG-GUCU---UUGUaCCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 27032 | 0.67 | 0.800923 |
Target: 5'- aGCAGgGG-GCCgAGggGCGcUGGCGc- -3' miRNA: 3'- aCGUCgCCgCGG-UCuuUGU-ACCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 127451 | 0.67 | 0.800923 |
Target: 5'- aGcCGGCGGCGCaC-GAAGCGcugGGCGg- -3' miRNA: 3'- aC-GUCGCCGCG-GuCUUUGUa--CCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 141983 | 0.67 | 0.800923 |
Target: 5'- gGUcgGGCGGC-CCGGGAaaaagaGCGcGGCGUGg -3' miRNA: 3'- aCG--UCGCCGcGGUCUU------UGUaCCGCAC- -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 3113 | 0.67 | 0.800923 |
Target: 5'- cGCcGCGGCGCgGGucccAGGCcgGGCGc- -3' miRNA: 3'- aCGuCGCCGCGgUC----UUUGuaCCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 57110 | 0.67 | 0.800923 |
Target: 5'- aGCAGCGcGCGCCGccgcGCccGGCGg- -3' miRNA: 3'- aCGUCGC-CGCGGUcuu-UGuaCCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 68014 | 0.67 | 0.800923 |
Target: 5'- gGCucGGCGGCGuCCAGGucCA-GGCGg- -3' miRNA: 3'- aCG--UCGCCGC-GGUCUuuGUaCCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 78578 | 0.67 | 0.800923 |
Target: 5'- cGCGGCGacGgGCCuGGAGC-UGGCGg- -3' miRNA: 3'- aCGUCGC--CgCGGuCUUUGuACCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 94052 | 0.67 | 0.800923 |
Target: 5'- cGCGGCGuCGCCGcGGAACAgcaucagcuggaUGGCGcUGu -3' miRNA: 3'- aCGUCGCcGCGGU-CUUUGU------------ACCGC-AC- -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 103765 | 0.67 | 0.800923 |
Target: 5'- cGCcGCGGCGCUGcgcgagucGGAGCGcUGGCGg- -3' miRNA: 3'- aCGuCGCCGCGGU--------CUUUGU-ACCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 115388 | 0.67 | 0.800923 |
Target: 5'- aGCAGCaGGCGCCGGAAggucuucucGCAcucgagcuugaUGGgGg- -3' miRNA: 3'- aCGUCG-CCGCGGUCUU---------UGU-----------ACCgCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 128617 | 0.67 | 0.800923 |
Target: 5'- cGCGGCGuGCGCCcc--AgGUGGCGg- -3' miRNA: 3'- aCGUCGC-CGCGGucuuUgUACCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 75403 | 0.67 | 0.791799 |
Target: 5'- gGguGCGuGCGCggguccgGGAGGCccGGCGUGg -3' miRNA: 3'- aCguCGC-CGCGg------UCUUUGuaCCGCAC- -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 95626 | 0.67 | 0.791799 |
Target: 5'- gUGCAGCGaG-GCCAGguGCGaGGCGc- -3' miRNA: 3'- -ACGUCGC-CgCGGUCuuUGUaCCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 20135 | 0.67 | 0.791799 |
Target: 5'- gGgGGCgGGCGCCgcGGggGCGgcGCGUGg -3' miRNA: 3'- aCgUCG-CCGCGG--UCuuUGUacCGCAC- -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 127807 | 0.67 | 0.789033 |
Target: 5'- cGCGGgGGCGCgAGGuccuugcgguucacGuACGUGGCGg- -3' miRNA: 3'- aCGUCgCCGCGgUCU--------------U-UGUACCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 72745 | 0.67 | 0.782528 |
Target: 5'- cGCAGCaGCGCCgAGucGC-UGGCGc- -3' miRNA: 3'- aCGUCGcCGCGG-UCuuUGuACCGCac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 131868 | 0.67 | 0.782528 |
Target: 5'- cGcCGGCGGCGUCGGGucGCAgGGCa-- -3' miRNA: 3'- aC-GUCGCCGCGGUCUu-UGUaCCGcac -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 99091 | 0.67 | 0.782528 |
Target: 5'- gGC-GCGGCGCCuGcgcacGGACcagGGCGUGc -3' miRNA: 3'- aCGuCGCCGCGGuC-----UUUGua-CCGCAC- -5' |
|||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 84631 | 0.67 | 0.782528 |
Target: 5'- cGCcGCGGCGCUGGAcaacgcCAUGGCc-- -3' miRNA: 3'- aCGuCGCCGCGGUCUuu----GUACCGcac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home