miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 67730 0.67 0.800923
Target:  5'- gGC-GCGGCGCaCAGGcacGGCGcGGCGg- -3'
miRNA:   3'- aCGuCGCCGCG-GUCU---UUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 27032 0.67 0.800923
Target:  5'- aGCAGgGG-GCCgAGggGCGcUGGCGc- -3'
miRNA:   3'- aCGUCgCCgCGG-UCuuUGU-ACCGCac -5'
29383 5' -56.7 NC_006151.1 + 127451 0.67 0.800923
Target:  5'- aGcCGGCGGCGCaC-GAAGCGcugGGCGg- -3'
miRNA:   3'- aC-GUCGCCGCG-GuCUUUGUa--CCGCac -5'
29383 5' -56.7 NC_006151.1 + 141983 0.67 0.800923
Target:  5'- gGUcgGGCGGC-CCGGGAaaaagaGCGcGGCGUGg -3'
miRNA:   3'- aCG--UCGCCGcGGUCUU------UGUaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 3113 0.67 0.800923
Target:  5'- cGCcGCGGCGCgGGucccAGGCcgGGCGc- -3'
miRNA:   3'- aCGuCGCCGCGgUC----UUUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 57110 0.67 0.800923
Target:  5'- aGCAGCGcGCGCCGccgcGCccGGCGg- -3'
miRNA:   3'- aCGUCGC-CGCGGUcuu-UGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 68014 0.67 0.800923
Target:  5'- gGCucGGCGGCGuCCAGGucCA-GGCGg- -3'
miRNA:   3'- aCG--UCGCCGC-GGUCUuuGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 78578 0.67 0.800923
Target:  5'- cGCGGCGacGgGCCuGGAGC-UGGCGg- -3'
miRNA:   3'- aCGUCGC--CgCGGuCUUUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 94052 0.67 0.800923
Target:  5'- cGCGGCGuCGCCGcGGAACAgcaucagcuggaUGGCGcUGu -3'
miRNA:   3'- aCGUCGCcGCGGU-CUUUGU------------ACCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 103765 0.67 0.800923
Target:  5'- cGCcGCGGCGCUGcgcgagucGGAGCGcUGGCGg- -3'
miRNA:   3'- aCGuCGCCGCGGU--------CUUUGU-ACCGCac -5'
29383 5' -56.7 NC_006151.1 + 115388 0.67 0.800923
Target:  5'- aGCAGCaGGCGCCGGAAggucuucucGCAcucgagcuugaUGGgGg- -3'
miRNA:   3'- aCGUCG-CCGCGGUCUU---------UGU-----------ACCgCac -5'
29383 5' -56.7 NC_006151.1 + 128617 0.67 0.800923
Target:  5'- cGCGGCGuGCGCCcc--AgGUGGCGg- -3'
miRNA:   3'- aCGUCGC-CGCGGucuuUgUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 75403 0.67 0.791799
Target:  5'- gGguGCGuGCGCggguccgGGAGGCccGGCGUGg -3'
miRNA:   3'- aCguCGC-CGCGg------UCUUUGuaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 95626 0.67 0.791799
Target:  5'- gUGCAGCGaG-GCCAGguGCGaGGCGc- -3'
miRNA:   3'- -ACGUCGC-CgCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 20135 0.67 0.791799
Target:  5'- gGgGGCgGGCGCCgcGGggGCGgcGCGUGg -3'
miRNA:   3'- aCgUCG-CCGCGG--UCuuUGUacCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 127807 0.67 0.789033
Target:  5'- cGCGGgGGCGCgAGGuccuugcgguucacGuACGUGGCGg- -3'
miRNA:   3'- aCGUCgCCGCGgUCU--------------U-UGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 72745 0.67 0.782528
Target:  5'- cGCAGCaGCGCCgAGucGC-UGGCGc- -3'
miRNA:   3'- aCGUCGcCGCGG-UCuuUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 131868 0.67 0.782528
Target:  5'- cGcCGGCGGCGUCGGGucGCAgGGCa-- -3'
miRNA:   3'- aC-GUCGCCGCGGUCUu-UGUaCCGcac -5'
29383 5' -56.7 NC_006151.1 + 99091 0.67 0.782528
Target:  5'- gGC-GCGGCGCCuGcgcacGGACcagGGCGUGc -3'
miRNA:   3'- aCGuCGCCGCGGuC-----UUUGua-CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 84631 0.67 0.782528
Target:  5'- cGCcGCGGCGCUGGAcaacgcCAUGGCc-- -3'
miRNA:   3'- aCGuCGCCGCGGUCUuu----GUACCGcac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.