miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 130594 0.66 0.82732
Target:  5'- gUGCAGCGGCaCCAGcgccuccCA-GGCGUc -3'
miRNA:   3'- -ACGUCGCCGcGGUCuuu----GUaCCGCAc -5'
29383 5' -56.7 NC_006151.1 + 84918 0.66 0.82732
Target:  5'- cGCGcGCGGCGCCGccucc--GGCGUGc -3'
miRNA:   3'- aCGU-CGCCGCGGUcuuuguaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 67646 0.66 0.82732
Target:  5'- cGCA-CGGCGuCCAGGAACAgcacGCGg- -3'
miRNA:   3'- aCGUcGCCGC-GGUCUUUGUac--CGCac -5'
29383 5' -56.7 NC_006151.1 + 73604 0.66 0.82732
Target:  5'- gUGCAGCuGGCGCCGc-AGC-UGGUGg- -3'
miRNA:   3'- -ACGUCG-CCGCGGUcuUUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 40565 0.66 0.82732
Target:  5'- aGCGGCGGCGgCGGccGC--GGCGg- -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 17913 0.67 0.822164
Target:  5'- cGCGGCGGCGCU-GAucgcgacgcccaucaGGCAgcggcGGCGUc -3'
miRNA:   3'- aCGUCGCCGCGGuCU---------------UUGUa----CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 72872 0.67 0.818691
Target:  5'- gGCGGCGGCGCCcGuguc--GGCGaUGa -3'
miRNA:   3'- aCGUCGCCGCGGuCuuuguaCCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 17135 0.67 0.818691
Target:  5'- cUGCGGgaGGCgGCCAGGAGCAccUGGUc-- -3'
miRNA:   3'- -ACGUCg-CCG-CGGUCUUUGU--ACCGcac -5'
29383 5' -56.7 NC_006151.1 + 17169 0.67 0.818691
Target:  5'- gGuCGGCGGCGcCCAGGAuccACA-GGUGg- -3'
miRNA:   3'- aC-GUCGCCGC-GGUCUU---UGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 20519 0.67 0.818691
Target:  5'- gGgGGCGGCGUgGuGAACAcGGCGUc -3'
miRNA:   3'- aCgUCGCCGCGgUcUUUGUaCCGCAc -5'
29383 5' -56.7 NC_006151.1 + 44897 0.67 0.818691
Target:  5'- gUGCGGUGGUGUguGugcGCGagaggGGCGUGu -3'
miRNA:   3'- -ACGUCGCCGCGguCuu-UGUa----CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 88184 0.67 0.818691
Target:  5'- gGUAGaCGGUGUCGGcgGCGUGGuCGg- -3'
miRNA:   3'- aCGUC-GCCGCGGUCuuUGUACC-GCac -5'
29383 5' -56.7 NC_006151.1 + 91026 0.67 0.818691
Target:  5'- cGCGGuCGcGCGCCGGGAAgGUcacgaccccGGCGcUGg -3'
miRNA:   3'- aCGUC-GC-CGCGGUCUUUgUA---------CCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 98336 0.67 0.818691
Target:  5'- gGCcGCGG-GCCGcGAGACGcccgcgGGCGUGc -3'
miRNA:   3'- aCGuCGCCgCGGU-CUUUGUa-----CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 99339 0.67 0.818691
Target:  5'- cGCAGCGcGcCGUCGGcuGCAcGGCGg- -3'
miRNA:   3'- aCGUCGC-C-GCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 133388 0.67 0.818691
Target:  5'- cGgGGCGGCgGCCGGGgccgAGCG-GGCGg- -3'
miRNA:   3'- aCgUCGCCG-CGGUCU----UUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 22531 0.67 0.815191
Target:  5'- aGUcgGGCGGgGCCGGGucaggcggaggccACGUGGCGg- -3'
miRNA:   3'- aCG--UCGCCgCGGUCUu------------UGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 64753 0.67 0.80989
Target:  5'- aGCAGCGGgGCCAc---CGUGcGCGg- -3'
miRNA:   3'- aCGUCGCCgCGGUcuuuGUAC-CGCac -5'
29383 5' -56.7 NC_006151.1 + 89717 0.67 0.809
Target:  5'- -cCGGCGGCGCCGGccGCggccgcgGUGGUGg- -3'
miRNA:   3'- acGUCGCCGCGGUCuuUG-------UACCGCac -5'
29383 5' -56.7 NC_006151.1 + 139736 0.67 0.808109
Target:  5'- aGCGGCGGCGacaGGAGGCGgaucguccggacGGCGg- -3'
miRNA:   3'- aCGUCGCCGCgg-UCUUUGUa-----------CCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.