miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 19124 0.68 0.713282
Target:  5'- cGCGGgGGCGCgcgcgcguaguacCAGuccAGCGUGGCGg- -3'
miRNA:   3'- aCGUCgCCGCG-------------GUCu--UUGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 19894 0.69 0.673508
Target:  5'- gGcCAGCaGCGCCAGGAGCugcgcGGCGc- -3'
miRNA:   3'- aC-GUCGcCGCGGUCUUUGua---CCGCac -5'
29383 5' -56.7 NC_006151.1 + 20135 0.67 0.791799
Target:  5'- gGgGGCgGGCGCCgcGGggGCGgcGCGUGg -3'
miRNA:   3'- aCgUCG-CCGCGG--UCuuUGUacCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 20323 0.7 0.652872
Target:  5'- gGCGGCGGCGagCAGGacgcgcgacacGACGcUGGCGUu -3'
miRNA:   3'- aCGUCGCCGCg-GUCU-----------UUGU-ACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 20519 0.67 0.818691
Target:  5'- gGgGGCGGCGUgGuGAACAcGGCGUc -3'
miRNA:   3'- aCgUCGCCGCGgUcUUUGUaCCGCAc -5'
29383 5' -56.7 NC_006151.1 + 21313 0.73 0.471341
Target:  5'- aGCGGUGGCGCgAGAcGCccGGCGc- -3'
miRNA:   3'- aCGUCGCCGCGgUCUuUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 21414 0.69 0.672478
Target:  5'- cGguGCGGCGUCucGGGccucgggggucgcGGCGUGGgGUGg -3'
miRNA:   3'- aCguCGCCGCGG--UCU-------------UUGUACCgCAC- -5'
29383 5' -56.7 NC_006151.1 + 21489 0.66 0.82732
Target:  5'- gGCAgGCGGC-CgGGggGCGcgGGCGUc -3'
miRNA:   3'- aCGU-CGCCGcGgUCuuUGUa-CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 21611 0.68 0.752952
Target:  5'- gGCGGCGGCGUaggcccgCGGGAGCGUccGGcCGUu -3'
miRNA:   3'- aCGUCGCCGCG-------GUCUUUGUA--CC-GCAc -5'
29383 5' -56.7 NC_006151.1 + 21974 0.7 0.649769
Target:  5'- gUGguGCGGCGCCGGcAGCGcccaaagaucugccUGGgGUc -3'
miRNA:   3'- -ACguCGCCGCGGUCuUUGU--------------ACCgCAc -5'
29383 5' -56.7 NC_006151.1 + 22531 0.67 0.815191
Target:  5'- aGUcgGGCGGgGCCGGGucaggcggaggccACGUGGCGg- -3'
miRNA:   3'- aCG--UCGCCgCGGUCUu------------UGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 25317 0.68 0.72333
Target:  5'- gUGCGGUGugaaugaGCGCCGG-GACGgccGGCGUGc -3'
miRNA:   3'- -ACGUCGC-------CGCGGUCuUUGUa--CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 27032 0.67 0.800923
Target:  5'- aGCAGgGG-GCCgAGggGCGcUGGCGc- -3'
miRNA:   3'- aCGUCgCCgCGG-UCuuUGU-ACCGCac -5'
29383 5' -56.7 NC_006151.1 + 27287 0.67 0.773119
Target:  5'- cGUAGCGcccGCGCUugGGggGCGUGGgGg- -3'
miRNA:   3'- aCGUCGC---CGCGG--UCuuUGUACCgCac -5'
29383 5' -56.7 NC_006151.1 + 27453 0.69 0.694005
Target:  5'- cGCGGUGG-GUCGGggGCG-GGCGg- -3'
miRNA:   3'- aCGUCGCCgCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 28765 0.67 0.782528
Target:  5'- gGCAGC-GUGCCAGGAcccgagucgGCggGGCGg- -3'
miRNA:   3'- aCGUCGcCGCGGUCUU---------UGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 29602 0.76 0.304395
Target:  5'- gGCcGCGGCGgCGGggGC-UGGUGUGg -3'
miRNA:   3'- aCGuCGCCGCgGUCuuUGuACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 30275 0.73 0.452565
Target:  5'- aGaCAGCGGCGCgGGggGag-GGUGUGu -3'
miRNA:   3'- aC-GUCGCCGCGgUCuuUguaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 30865 0.68 0.744156
Target:  5'- gGCGGCGGCGgCGGAGGag-GGgGg- -3'
miRNA:   3'- aCGUCGCCGCgGUCUUUguaCCgCac -5'
29383 5' -56.7 NC_006151.1 + 30955 0.72 0.519901
Target:  5'- cGCGGCGGC-CCGGGAGagcgGGCGg- -3'
miRNA:   3'- aCGUCGCCGcGGUCUUUgua-CCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.