miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 128047 0.71 0.580545
Target:  5'- gGCAGCGGCGgCAGcgGCGgcugcgcgggGGCGa- -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGUa---------CCGCac -5'
29383 5' -56.7 NC_006151.1 + 127850 0.7 0.632168
Target:  5'- cGCGGCuGCGCCGGAGGg--GGCGc- -3'
miRNA:   3'- aCGUCGcCGCGGUCUUUguaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 127807 0.67 0.789033
Target:  5'- cGCGGgGGCGCgAGGuccuugcgguucacGuACGUGGCGg- -3'
miRNA:   3'- aCGUCgCCGCGgUCU--------------U-UGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 127491 0.66 0.835766
Target:  5'- cGCGGaccccGCGCCGGAAGC-UGGUGc- -3'
miRNA:   3'- aCGUCgc---CGCGGUCUUUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 127451 0.67 0.800923
Target:  5'- aGcCGGCGGCGCaC-GAAGCGcugGGCGg- -3'
miRNA:   3'- aC-GUCGCCGCG-GuCUUUGUa--CCGCac -5'
29383 5' -56.7 NC_006151.1 + 125551 0.73 0.470392
Target:  5'- cGCGGCGGCGUguacgugCAGAAcucCAUGcGCGUGc -3'
miRNA:   3'- aCGUCGCCGCG-------GUCUUu--GUAC-CGCAC- -5'
29383 5' -56.7 NC_006151.1 + 123219 0.68 0.763581
Target:  5'- gGCGGUGGcCGCCGGGuuccgcGCAcGGCGc- -3'
miRNA:   3'- aCGUCGCC-GCGGUCUu-----UGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 123149 0.7 0.6001
Target:  5'- aGCAGCGGCGCgAGcuggagaAGACccUGcGCGUGa -3'
miRNA:   3'- aCGUCGCCGCGgUC-------UUUGu-AC-CGCAC- -5'
29383 5' -56.7 NC_006151.1 + 122965 0.69 0.694005
Target:  5'- gGC-GCGGaCGCCGGcGACGggGGCGUc -3'
miRNA:   3'- aCGuCGCC-GCGGUCuUUGUa-CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 122464 0.75 0.373526
Target:  5'- gGCGGCGGCgggcgccgagGCCGGGGACGcgGGCGa- -3'
miRNA:   3'- aCGUCGCCG----------CGGUCUUUGUa-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 120769 0.66 0.835766
Target:  5'- gGguGCGGCGCCc---GC-UGGCGg- -3'
miRNA:   3'- aCguCGCCGCGGucuuUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 118886 0.7 0.611464
Target:  5'- cGCGGCGGCgacgcggccGCCGGcGgccucgagcgccGCAUGGCGUc -3'
miRNA:   3'- aCGUCGCCG---------CGGUCuU------------UGUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 118176 0.68 0.767411
Target:  5'- cGCGGCcugaccgucgaggccGGCuucGCCGGgcACGUGGcCGUGg -3'
miRNA:   3'- aCGUCG---------------CCG---CGGUCuuUGUACC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 115388 0.67 0.800923
Target:  5'- aGCAGCaGGCGCCGGAAggucuucucGCAcucgagcuugaUGGgGg- -3'
miRNA:   3'- aCGUCG-CCGCGGUCUU---------UGU-----------ACCgCac -5'
29383 5' -56.7 NC_006151.1 + 113310 0.66 0.859938
Target:  5'- cGCGGUGGaCGCCAcgcuGggGCccgugcUGGCGcUGg -3'
miRNA:   3'- aCGUCGCC-GCGGU----CuuUGu-----ACCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 111312 0.66 0.859938
Target:  5'- cGCGGCGGcCGCguGcccGGGCAcgGGCGa- -3'
miRNA:   3'- aCGUCGCC-GCGguC---UUUGUa-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 111259 0.68 0.734289
Target:  5'- aGCAGCGaG-GCCGGGAACcgcgcgGGCGg- -3'
miRNA:   3'- aCGUCGC-CgCGGUCUUUGua----CCGCac -5'
29383 5' -56.7 NC_006151.1 + 109536 0.7 0.601132
Target:  5'- aGCAGCgccccccggaGGCGCCGuGGACGUGGCc-- -3'
miRNA:   3'- aCGUCG----------CCGCGGUcUUUGUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 106675 0.66 0.859938
Target:  5'- gGCcGCGGCGCuCGGcgcGCcgGGCGc- -3'
miRNA:   3'- aCGuCGCCGCG-GUCuu-UGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 105730 0.7 0.642524
Target:  5'- cGCcguGCGcGCGCCuGAAGCAgcGCGUGg -3'
miRNA:   3'- aCGu--CGC-CGCGGuCUUUGUacCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.