miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 141983 0.67 0.800923
Target:  5'- gGUcgGGCGGC-CCGGGAaaaagaGCGcGGCGUGg -3'
miRNA:   3'- aCG--UCGCCGcGGUCUU------UGUaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 141651 0.67 0.775956
Target:  5'- cGCGGCGGgGCCccgcgggcucguuguGGAGGCAUgucugccucccacGGCGg- -3'
miRNA:   3'- aCGUCGCCgCGG---------------UCUUUGUA-------------CCGCac -5'
29383 5' -56.7 NC_006151.1 + 139736 0.67 0.808109
Target:  5'- aGCGGCGGCGacaGGAGGCGgaucguccggacGGCGg- -3'
miRNA:   3'- aCGUCGCCGCgg-UCUUUGUa-----------CCGCac -5'
29383 5' -56.7 NC_006151.1 + 137143 0.71 0.570305
Target:  5'- cGCGacGCGGCGCCGGAGA--UGGCc-- -3'
miRNA:   3'- aCGU--CGCCGCGGUCUUUguACCGcac -5'
29383 5' -56.7 NC_006151.1 + 135093 0.71 0.590823
Target:  5'- gGCGGCGGgGCCGG--GCG-GGCGg- -3'
miRNA:   3'- aCGUCGCCgCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 134804 0.74 0.416283
Target:  5'- cGCGGCGGCccgcGCCGGAcccgGACgGUGGCGa- -3'
miRNA:   3'- aCGUCGCCG----CGGUCU----UUG-UACCGCac -5'
29383 5' -56.7 NC_006151.1 + 133702 0.7 0.641489
Target:  5'- cGuCGGCGGCGacCCGGGucuuucucgagcuGACAUGGCGa- -3'
miRNA:   3'- aC-GUCGCCGC--GGUCU-------------UUGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 133388 0.67 0.818691
Target:  5'- cGgGGCGGCgGCCGGGgccgAGCG-GGCGg- -3'
miRNA:   3'- aCgUCGCCG-CGGUCU----UUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 133352 0.69 0.683778
Target:  5'- cGCGGCGGCGgUGGuGGugGUGGUGgUGg -3'
miRNA:   3'- aCGUCGCCGCgGUC-UUugUACCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 133157 0.66 0.835766
Target:  5'- gGCGGCGGCGCg--------GGCGUGg -3'
miRNA:   3'- aCGUCGCCGCGgucuuuguaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 132038 0.69 0.673508
Target:  5'- aGcCGGCGGCGCgCGGcAGCGcGGCGg- -3'
miRNA:   3'- aC-GUCGCCGCG-GUCuUUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 131868 0.67 0.782528
Target:  5'- cGcCGGCGGCGUCGGGucGCAgGGCa-- -3'
miRNA:   3'- aC-GUCGCCGCGGUCUu-UGUaCCGcac -5'
29383 5' -56.7 NC_006151.1 + 131118 0.7 0.632168
Target:  5'- gGCcGCGGCGCgGGAGGCcgcGGCGc- -3'
miRNA:   3'- aCGuCGCCGCGgUCUUUGua-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 130884 0.71 0.580545
Target:  5'- gGCGGCGGCGgUGGAGGC--GGCGg- -3'
miRNA:   3'- aCGUCGCCGCgGUCUUUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 130739 0.66 0.835766
Target:  5'- cGCGGCGcaGCGCCAcccacGAcGGCAUGGCc-- -3'
miRNA:   3'- aCGUCGC--CGCGGU-----CU-UUGUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 130594 0.66 0.82732
Target:  5'- gUGCAGCGGCaCCAGcgccuccCA-GGCGUc -3'
miRNA:   3'- -ACGUCGCCGcGGUCuuu----GUaCCGCAc -5'
29383 5' -56.7 NC_006151.1 + 130444 1.09 0.001983
Target:  5'- cUGCAGCGGCGCCAGAAACAUGGCGUGg -3'
miRNA:   3'- -ACGUCGCCGCGGUCUUUGUACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 129832 0.7 0.611464
Target:  5'- cGCGGCGGCGuagcCCAGcGACAcGGCcUGg -3'
miRNA:   3'- aCGUCGCCGC----GGUCuUUGUaCCGcAC- -5'
29383 5' -56.7 NC_006151.1 + 129286 0.72 0.490504
Target:  5'- cGCGGCgcguuccucgGGCGCgGcGGAGCAUGGCGg- -3'
miRNA:   3'- aCGUCG----------CCGCGgU-CUUUGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 128617 0.67 0.800923
Target:  5'- cGCGGCGuGCGCCcc--AgGUGGCGg- -3'
miRNA:   3'- aCGUCGC-CGCGGucuuUgUACCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.