Results 1 - 20 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 130444 | 1.09 | 0.001983 |
Target: 5'- cUGCAGCGGCGCCAGAAACAUGGCGUGg -3' miRNA: 3'- -ACGUCGCCGCGGUCUUUGUACCGCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 6297 | 0.79 | 0.206525 |
Target: 5'- gGCGGCGGcCGCCAGGAGC-UGGC-UGa -3' miRNA: 3'- aCGUCGCC-GCGGUCUUUGuACCGcAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 90740 | 0.78 | 0.24552 |
Target: 5'- gGCGGCGGCGCCcucGGggGCGgcgGGCacgGUGg -3' miRNA: 3'- aCGUCGCCGCGG---UCuuUGUa--CCG---CAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 59422 | 0.77 | 0.257733 |
Target: 5'- aGCAGCGGCGCCAGcucGGCGUcGGCc-- -3' miRNA: 3'- aCGUCGCCGCGGUCu--UUGUA-CCGcac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 5092 | 0.77 | 0.264023 |
Target: 5'- cGCGGCGGgCGCCggcGGAGACgGUGGCGg- -3' miRNA: 3'- aCGUCGCC-GCGG---UCUUUG-UACCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 40531 | 0.77 | 0.283641 |
Target: 5'- cUGCGGCGGCGgCGGAG--GUGGCGg- -3' miRNA: 3'- -ACGUCGCCGCgGUCUUugUACCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 63485 | 0.76 | 0.29735 |
Target: 5'- gGCGGCGGCGCCcGAAGaagGUGGCcagGUGg -3' miRNA: 3'- aCGUCGCCGCGGuCUUUg--UACCG---CAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 29602 | 0.76 | 0.304395 |
Target: 5'- gGCcGCGGCGgCGGggGC-UGGUGUGg -3' miRNA: 3'- aCGuCGCCGCgGUCuuUGuACCGCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 5245 | 0.76 | 0.33385 |
Target: 5'- cGCGGCGGCGgCGGggGCccggggGGCGg- -3' miRNA: 3'- aCGUCGCCGCgGUCuuUGua----CCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 6230 | 0.76 | 0.33385 |
Target: 5'- aGCcGCGGCGCCGGGAGCccUGGCu-- -3' miRNA: 3'- aCGuCGCCGCGGUCUUUGu-ACCGcac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 97364 | 0.75 | 0.357278 |
Target: 5'- cGCGGCGGCGgCGGgcGCGgcgggGGCGUc -3' miRNA: 3'- aCGUCGCCGCgGUCuuUGUa----CCGCAc -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 65460 | 0.75 | 0.36534 |
Target: 5'- cGCAGCGGCGCCgAGAGuccCAUcaGGCGc- -3' miRNA: 3'- aCGUCGCCGCGG-UCUUu--GUA--CCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 81539 | 0.75 | 0.373526 |
Target: 5'- cGCGGCGGCGCgcuccgCGGugcACAUGGcCGUGg -3' miRNA: 3'- aCGUCGCCGCG------GUCuu-UGUACC-GCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 122464 | 0.75 | 0.373526 |
Target: 5'- gGCGGCGGCgggcgccgagGCCGGGGACGcgGGCGa- -3' miRNA: 3'- aCGUCGCCG----------CGGUCUUUGUa-CCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 103639 | 0.74 | 0.415399 |
Target: 5'- gGCGGCGGCGCUGGcggacgcGGACAcGGCGg- -3' miRNA: 3'- aCGUCGCCGCGGUC-------UUUGUaCCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 9492 | 0.74 | 0.416283 |
Target: 5'- gGCcGCGGCGUgGGAGAgCggGGCGUGu -3' miRNA: 3'- aCGuCGCCGCGgUCUUU-GuaCCGCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 134804 | 0.74 | 0.416283 |
Target: 5'- cGCGGCGGCccgcGCCGGAcccgGACgGUGGCGa- -3' miRNA: 3'- aCGUCGCCG----CGGUCU----UUG-UACCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 75280 | 0.74 | 0.425187 |
Target: 5'- cGCAGCGcCGCCA---GCGUGGCGUc -3' miRNA: 3'- aCGUCGCcGCGGUcuuUGUACCGCAc -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 89488 | 0.74 | 0.425187 |
Target: 5'- cGCGGCGGCgaGCCGGuacGCGcgGGUGUGg -3' miRNA: 3'- aCGUCGCCG--CGGUCuu-UGUa-CCGCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 54642 | 0.73 | 0.434204 |
Target: 5'- aGCGGCGGCGCgAGcgcuGCGUGGaCGa- -3' miRNA: 3'- aCGUCGCCGCGgUCuu--UGUACC-GCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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