miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 96876 0.66 0.863022
Target:  5'- cGCGGC-GCGCgCGGggGCAUgaugggaugugucugGGCGg- -3'
miRNA:   3'- aCGUCGcCGCG-GUCuuUGUA---------------CCGCac -5'
29383 5' -56.7 NC_006151.1 + 83004 0.66 0.859938
Target:  5'- gGCcGCGGCG-CAGAcGCGcGGCGa- -3'
miRNA:   3'- aCGuCGCCGCgGUCUuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 86505 0.66 0.859938
Target:  5'- --gGGCGGCGCguGGGcaccauCGUGGUGUa -3'
miRNA:   3'- acgUCGCCGCGguCUUu-----GUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 58416 0.66 0.859938
Target:  5'- cGCAGCugGGCGUgCGGcAGCcacgccucgGUGGCGUGc -3'
miRNA:   3'- aCGUCG--CCGCG-GUCuUUG---------UACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 106675 0.66 0.859938
Target:  5'- gGCcGCGGCGCuCGGcgcGCcgGGCGc- -3'
miRNA:   3'- aCGuCGCCGCG-GUCuu-UGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 111312 0.66 0.859938
Target:  5'- cGCGGCGGcCGCguGcccGGGCAcgGGCGa- -3'
miRNA:   3'- aCGUCGCC-GCGguC---UUUGUa-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 113310 0.66 0.859938
Target:  5'- cGCGGUGGaCGCCAcgcuGggGCccgugcUGGCGcUGg -3'
miRNA:   3'- aCGUCGCC-GCGGU----CuuUGu-----ACCGC-AC- -5'
29383 5' -56.7 NC_006151.1 + 85970 0.66 0.852082
Target:  5'- cGCGGCGgacaaGCGCCucGGGCAguuUGGCGUc -3'
miRNA:   3'- aCGUCGC-----CGCGGucUUUGU---ACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 57175 0.66 0.852082
Target:  5'- gGC-GCGGC-CCAGAAGuCggGGuCGUGg -3'
miRNA:   3'- aCGuCGCCGcGGUCUUU-GuaCC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 98950 0.66 0.852082
Target:  5'- gGCGGCGcGgGCCGuGGACGaGGCGg- -3'
miRNA:   3'- aCGUCGC-CgCGGUcUUUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 2296 0.66 0.851286
Target:  5'- cGCGGCGGCGacggcgcCCGGGgucagcaccAGCggGGCGg- -3'
miRNA:   3'- aCGUCGCCGC-------GGUCU---------UUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 68216 0.66 0.844023
Target:  5'- aGCGGCccuGCGCCAGgcGCAgcgcccgcgGGCGc- -3'
miRNA:   3'- aCGUCGc--CGCGGUCuuUGUa--------CCGCac -5'
29383 5' -56.7 NC_006151.1 + 74140 0.66 0.844023
Target:  5'- gUGCAGCgGGUGCCGGggGuCGUc-CGUGc -3'
miRNA:   3'- -ACGUCG-CCGCGGUCuuU-GUAccGCAC- -5'
29383 5' -56.7 NC_006151.1 + 98008 0.66 0.835766
Target:  5'- cGCguaGGCGGCGCCGGccagguccgcGGgGUGGCGc- -3'
miRNA:   3'- aCG---UCGCCGCGGUCu---------UUgUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 99984 0.66 0.835766
Target:  5'- cGUGGCGGCGCUggcgcgcgaGGAccuGACgGUGGCGc- -3'
miRNA:   3'- aCGUCGCCGCGG---------UCU---UUG-UACCGCac -5'
29383 5' -56.7 NC_006151.1 + 127491 0.66 0.835766
Target:  5'- cGCGGaccccGCGCCGGAAGC-UGGUGc- -3'
miRNA:   3'- aCGUCgc---CGCGGUCUUUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 130739 0.66 0.835766
Target:  5'- cGCGGCGcaGCGCCAcccacGAcGGCAUGGCc-- -3'
miRNA:   3'- aCGUCGC--CGCGGU-----CU-UUGUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 133157 0.66 0.835766
Target:  5'- gGCGGCGGCGCg--------GGCGUGg -3'
miRNA:   3'- aCGUCGCCGCGgucuuuguaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 120769 0.66 0.835766
Target:  5'- gGguGCGGCGCCc---GC-UGGCGg- -3'
miRNA:   3'- aCguCGCCGCGGucuuUGuACCGCac -5'
29383 5' -56.7 NC_006151.1 + 130594 0.66 0.82732
Target:  5'- gUGCAGCGGCaCCAGcgccuccCA-GGCGUc -3'
miRNA:   3'- -ACGUCGCCGcGGUCuuu----GUaCCGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.