miRNA display CGI


Results 1 - 20 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 2296 0.66 0.851286
Target:  5'- cGCGGCGGCGacggcgcCCGGGgucagcaccAGCggGGCGg- -3'
miRNA:   3'- aCGUCGCCGC-------GGUCU---------UUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 2684 0.67 0.773119
Target:  5'- cGCAGCGGCucgGCCccgGGguGCAggcgGGCGa- -3'
miRNA:   3'- aCGUCGCCG---CGG---UCuuUGUa---CCGCac -5'
29383 5' -56.7 NC_006151.1 + 3113 0.67 0.800923
Target:  5'- cGCcGCGGCGCgGGucccAGGCcgGGCGc- -3'
miRNA:   3'- aCGuCGCCGCGgUC----UUUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 3276 0.68 0.763581
Target:  5'- cGCGGCGauguGCGCCAGGgcGGCcgGGUcgaagGUGa -3'
miRNA:   3'- aCGUCGC----CGCGGUCU--UUGuaCCG-----CAC- -5'
29383 5' -56.7 NC_006151.1 + 4081 0.7 0.652872
Target:  5'- -cCAGCGGCGCCAcGguGCG-GGCGa- -3'
miRNA:   3'- acGUCGCCGCGGU-CuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 4279 0.7 0.652872
Target:  5'- cGCcGCGGCagGCCAGGAcGCA-GGCGUc -3'
miRNA:   3'- aCGuCGCCG--CGGUCUU-UGUaCCGCAc -5'
29383 5' -56.7 NC_006151.1 + 4569 0.68 0.744156
Target:  5'- gGCAGCGGCggggucacgcuGCCggugaugaAGGAGcCGUGGcCGUGg -3'
miRNA:   3'- aCGUCGCCG-----------CGG--------UCUUU-GUACC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 4991 0.73 0.461903
Target:  5'- gUGgAGCGGCGCUuccugcgcGGggGCcgGGCGg- -3'
miRNA:   3'- -ACgUCGCCGCGG--------UCuuUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 5092 0.77 0.264023
Target:  5'- cGCGGCGGgCGCCggcGGAGACgGUGGCGg- -3'
miRNA:   3'- aCGUCGCC-GCGG---UCUUUG-UACCGCac -5'
29383 5' -56.7 NC_006151.1 + 5245 0.76 0.33385
Target:  5'- cGCGGCGGCGgCGGggGCccggggGGCGg- -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGua----CCGCac -5'
29383 5' -56.7 NC_006151.1 + 6230 0.76 0.33385
Target:  5'- aGCcGCGGCGCCGGGAGCccUGGCu-- -3'
miRNA:   3'- aCGuCGCCGCGGUCUUUGu-ACCGcac -5'
29383 5' -56.7 NC_006151.1 + 6297 0.79 0.206525
Target:  5'- gGCGGCGGcCGCCAGGAGC-UGGC-UGa -3'
miRNA:   3'- aCGUCGCC-GCGGUCUUUGuACCGcAC- -5'
29383 5' -56.7 NC_006151.1 + 9492 0.74 0.416283
Target:  5'- gGCcGCGGCGUgGGAGAgCggGGCGUGu -3'
miRNA:   3'- aCGuCGCCGCGgUCUUU-GuaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 14268 0.67 0.782528
Target:  5'- cGgGGUGG-GCCGGGAGug-GGCGUGg -3'
miRNA:   3'- aCgUCGCCgCGGUCUUUguaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 16978 0.7 0.652872
Target:  5'- gGC-GUGGCGCCAGGAGCG-GuuGUGg -3'
miRNA:   3'- aCGuCGCCGCGGUCUUUGUaCcgCAC- -5'
29383 5' -56.7 NC_006151.1 + 17104 0.7 0.632168
Target:  5'- cGUcGgGGCGCCGGggGCuccGGCGg- -3'
miRNA:   3'- aCGuCgCCGCGGUCuuUGua-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 17135 0.67 0.818691
Target:  5'- cUGCGGgaGGCgGCCAGGAGCAccUGGUc-- -3'
miRNA:   3'- -ACGUCg-CCG-CGGUCUUUGU--ACCGcac -5'
29383 5' -56.7 NC_006151.1 + 17169 0.67 0.818691
Target:  5'- gGuCGGCGGCGcCCAGGAuccACA-GGUGg- -3'
miRNA:   3'- aC-GUCGCCGC-GGUCUU---UGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 17913 0.67 0.822164
Target:  5'- cGCGGCGGCGCU-GAucgcgacgcccaucaGGCAgcggcGGCGUc -3'
miRNA:   3'- aCGUCGCCGCGGuCU---------------UUGUa----CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 18824 0.68 0.711264
Target:  5'- cGCGGUGGCGacgagcguguagucCCAGGuggcGACGUGGCcguuGUGg -3'
miRNA:   3'- aCGUCGCCGC--------------GGUCU----UUGUACCG----CAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.