miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 75314 0.68 0.744156
Target:  5'- aGgAGgGGUGgCAGAGGgugccCAUGGCGUGc -3'
miRNA:   3'- aCgUCgCCGCgGUCUUU-----GUACCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 4569 0.68 0.744156
Target:  5'- gGCAGCGGCggggucacgcuGCCggugaugaAGGAGcCGUGGcCGUGg -3'
miRNA:   3'- aCGUCGCCG-----------CGG--------UCUUU-GUACC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 30865 0.68 0.744156
Target:  5'- gGCGGCGGCGgCGGAGGag-GGgGg- -3'
miRNA:   3'- aCGUCGCCGCgGUCUUUguaCCgCac -5'
29383 5' -56.7 NC_006151.1 + 103962 0.68 0.734289
Target:  5'- cGCGGC-GCGCCAGc-GCGUcGGCGa- -3'
miRNA:   3'- aCGUCGcCGCGGUCuuUGUA-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 91304 0.68 0.734289
Target:  5'- aGCAGCcGCGCCGGGAA---GGCGc- -3'
miRNA:   3'- aCGUCGcCGCGGUCUUUguaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 111259 0.68 0.734289
Target:  5'- aGCAGCGaG-GCCGGGAACcgcgcgGGCGg- -3'
miRNA:   3'- aCGUCGC-CgCGGUCUUUGua----CCGCac -5'
29383 5' -56.7 NC_006151.1 + 74512 0.68 0.734289
Target:  5'- --gAGCGGgGgCAGcAGCGUGGCGUc -3'
miRNA:   3'- acgUCGCCgCgGUCuUUGUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 84781 0.68 0.72433
Target:  5'- cGCGGCGcGCGCCgccgaGGAGGCGcccgaGGCGa- -3'
miRNA:   3'- aCGUCGC-CGCGG-----UCUUUGUa----CCGCac -5'
29383 5' -56.7 NC_006151.1 + 25317 0.68 0.72333
Target:  5'- gUGCGGUGugaaugaGCGCCGG-GACGgccGGCGUGc -3'
miRNA:   3'- -ACGUCGC-------CGCGGUCuUUGUa--CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 97980 0.68 0.71429
Target:  5'- cGCGGUGGUucuuGCCGGGcGGCGUGGCc-- -3'
miRNA:   3'- aCGUCGCCG----CGGUCU-UUGUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 92141 0.68 0.71429
Target:  5'- cGCGcGCGGCGCCAaGGccauCAUGGCc-- -3'
miRNA:   3'- aCGU-CGCCGCGGU-CUuu--GUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 64906 0.68 0.71429
Target:  5'- cGCAGCGGCGCgc-GAGCAccuccacGGCGUa -3'
miRNA:   3'- aCGUCGCCGCGgucUUUGUa------CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 19124 0.68 0.713282
Target:  5'- cGCGGgGGCGCgcgcgcguaguacCAGuccAGCGUGGCGg- -3'
miRNA:   3'- aCGUCgCCGCG-------------GUCu--UUGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 71777 0.68 0.712273
Target:  5'- gGCAGCGGCGgCGGggGCugccgcaccagcUGGCc-- -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGu-----------ACCGcac -5'
29383 5' -56.7 NC_006151.1 + 18824 0.68 0.711264
Target:  5'- cGCGGUGGCGacgagcguguagucCCAGGuggcGACGUGGCcguuGUGg -3'
miRNA:   3'- aCGUCGCCGC--------------GGUCU----UUGUACCG----CAC- -5'
29383 5' -56.7 NC_006151.1 + 53749 0.69 0.704179
Target:  5'- cGUAGCGGCucgaguacgccGCCGaGAGCuUGGCGUa -3'
miRNA:   3'- aCGUCGCCG-----------CGGUcUUUGuACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 122965 0.69 0.694005
Target:  5'- gGC-GCGGaCGCCGGcGACGggGGCGUc -3'
miRNA:   3'- aCGuCGCC-GCGGUCuUUGUa-CCGCAc -5'
29383 5' -56.7 NC_006151.1 + 102689 0.69 0.694005
Target:  5'- cGCGGgGGCGCCcGgcGCG-GGCGg- -3'
miRNA:   3'- aCGUCgCCGCGGuCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 100425 0.69 0.694005
Target:  5'- cGCGGgGGCGCU----GCGcGGCGUGa -3'
miRNA:   3'- aCGUCgCCGCGGucuuUGUaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 27453 0.69 0.694005
Target:  5'- cGCGGUGG-GUCGGggGCG-GGCGg- -3'
miRNA:   3'- aCGUCGCCgCGGUCuuUGUaCCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.