Results 101 - 120 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 133352 | 0.69 | 0.683778 |
Target: 5'- cGCGGCGGCGgUGGuGGugGUGGUGgUGg -3' miRNA: 3'- aCGUCGCCGCgGUC-UUugUACCGC-AC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 68274 | 0.69 | 0.683778 |
Target: 5'- gGUcGCGGCGCCGGgcGCcacGGCGg- -3' miRNA: 3'- aCGuCGCCGCGGUCuuUGua-CCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 44394 | 0.69 | 0.683778 |
Target: 5'- cGCGGgGGCGCCgaGGAGGgAgggGcGCGUGu -3' miRNA: 3'- aCGUCgCCGCGG--UCUUUgUa--C-CGCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 132038 | 0.69 | 0.673508 |
Target: 5'- aGcCGGCGGCGCgCGGcAGCGcGGCGg- -3' miRNA: 3'- aC-GUCGCCGCG-GUCuUUGUaCCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 64008 | 0.69 | 0.673508 |
Target: 5'- cGguGCGGCGCCAGgcGCccGaucGCGUc -3' miRNA: 3'- aCguCGCCGCGGUCuuUGuaC---CGCAc -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 19894 | 0.69 | 0.673508 |
Target: 5'- gGcCAGCaGCGCCAGGAGCugcgcGGCGc- -3' miRNA: 3'- aC-GUCGcCGCGGUCUUUGua---CCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 21414 | 0.69 | 0.672478 |
Target: 5'- cGguGCGGCGUCucGGGccucgggggucgcGGCGUGGgGUGg -3' miRNA: 3'- aCguCGCCGCGG--UCU-------------UUGUACCgCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 64610 | 0.69 | 0.672478 |
Target: 5'- cGcCAGCGGCGCCGcgccgccggccgcGggGCGcGGCGc- -3' miRNA: 3'- aC-GUCGCCGCGGU-------------CuuUGUaCCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 61778 | 0.69 | 0.663202 |
Target: 5'- gUGCuGCGGCGCgAGGccggccGGC-UGGCGUu -3' miRNA: 3'- -ACGuCGCCGCGgUCU------UUGuACCGCAc -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 4081 | 0.7 | 0.652872 |
Target: 5'- -cCAGCGGCGCCAcGguGCG-GGCGa- -3' miRNA: 3'- acGUCGCCGCGGU-CuuUGUaCCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 4279 | 0.7 | 0.652872 |
Target: 5'- cGCcGCGGCagGCCAGGAcGCA-GGCGUc -3' miRNA: 3'- aCGuCGCCG--CGGUCUU-UGUaCCGCAc -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 16978 | 0.7 | 0.652872 |
Target: 5'- gGC-GUGGCGCCAGGAGCG-GuuGUGg -3' miRNA: 3'- aCGuCGCCGCGGUCUUUGUaCcgCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 20323 | 0.7 | 0.652872 |
Target: 5'- gGCGGCGGCGagCAGGacgcgcgacacGACGcUGGCGUu -3' miRNA: 3'- aCGUCGCCGCg-GUCU-----------UUGU-ACCGCAc -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 73329 | 0.7 | 0.652872 |
Target: 5'- gGCGG-GGCGCCGc--GCGUGGCGa- -3' miRNA: 3'- aCGUCgCCGCGGUcuuUGUACCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 96388 | 0.7 | 0.652872 |
Target: 5'- cGCGcGCGGUGCCGGc-GCAcGGCGg- -3' miRNA: 3'- aCGU-CGCCGCGGUCuuUGUaCCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 21974 | 0.7 | 0.649769 |
Target: 5'- gUGguGCGGCGCCGGcAGCGcccaaagaucugccUGGgGUc -3' miRNA: 3'- -ACguCGCCGCGGUCuUUGU--------------ACCgCAc -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 58629 | 0.7 | 0.646665 |
Target: 5'- cGCAGCGGCucguagaaggccagcGCCGGGAggGCGcGGCGc- -3' miRNA: 3'- aCGUCGCCG---------------CGGUCUU--UGUaCCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 105730 | 0.7 | 0.642524 |
Target: 5'- cGCcguGCGcGCGCCuGAAGCAgcGCGUGg -3' miRNA: 3'- aCGu--CGC-CGCGGuCUUUGUacCGCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 60112 | 0.7 | 0.642524 |
Target: 5'- gGCAGCGGCGCU-GGAAC-UGcGCGc- -3' miRNA: 3'- aCGUCGCCGCGGuCUUUGuAC-CGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 31697 | 0.7 | 0.642524 |
Target: 5'- aGcCGGCcgcgccauugGGCGCCGGGcggAACggGGCGUGg -3' miRNA: 3'- aC-GUCG----------CCGCGGUCU---UUGuaCCGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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