Results 61 - 80 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29383 | 5' | -56.7 | NC_006151.1 | + | 118886 | 0.7 | 0.611464 |
Target: 5'- cGCGGCGGCgacgcggccGCCGGcGgccucgagcgccGCAUGGCGUc -3' miRNA: 3'- aCGUCGCCG---------CGGUCuU------------UGUACCGCAc -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 96587 | 0.7 | 0.611464 |
Target: 5'- cGCGGCgcgaGGCGCCGGgcGCG-GGCGc- -3' miRNA: 3'- aCGUCG----CCGCGGUCuuUGUaCCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 129832 | 0.7 | 0.611464 |
Target: 5'- cGCGGCGGCGuagcCCAGcGACAcGGCcUGg -3' miRNA: 3'- aCGUCGCCGC----GGUCuUUGUaCCGcAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 99473 | 0.7 | 0.619741 |
Target: 5'- gUGaCGGCGGCGCU-GggGCuccccgagaagGGCGUGg -3' miRNA: 3'- -AC-GUCGCCGCGGuCuuUGua---------CCGCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 101913 | 0.7 | 0.621812 |
Target: 5'- aUGCccaAGCGGCGCCGGccccCGUGGCc-- -3' miRNA: 3'- -ACG---UCGCCGCGGUCuuu-GUACCGcac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 38381 | 0.7 | 0.632168 |
Target: 5'- aGCGcCGGCGCCGGcgGCGgcgGGCGc- -3' miRNA: 3'- aCGUcGCCGCGGUCuuUGUa--CCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 131118 | 0.7 | 0.632168 |
Target: 5'- gGCcGCGGCGCgGGAGGCcgcGGCGc- -3' miRNA: 3'- aCGuCGCCGCGgUCUUUGua-CCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 27453 | 0.69 | 0.694005 |
Target: 5'- cGCGGUGG-GUCGGggGCG-GGCGg- -3' miRNA: 3'- aCGUCGCCgCGGUCuuUGUaCCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 132038 | 0.69 | 0.673508 |
Target: 5'- aGcCGGCGGCGCgCGGcAGCGcGGCGg- -3' miRNA: 3'- aC-GUCGCCGCG-GUCuUUGUaCCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 100425 | 0.69 | 0.694005 |
Target: 5'- cGCGGgGGCGCU----GCGcGGCGUGa -3' miRNA: 3'- aCGUCgCCGCGGucuuUGUaCCGCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 44394 | 0.69 | 0.683778 |
Target: 5'- cGCGGgGGCGCCgaGGAGGgAgggGcGCGUGu -3' miRNA: 3'- aCGUCgCCGCGG--UCUUUgUa--C-CGCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 102689 | 0.69 | 0.694005 |
Target: 5'- cGCGGgGGCGCCcGgcGCG-GGCGg- -3' miRNA: 3'- aCGUCgCCGCGGuCuuUGUaCCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 64610 | 0.69 | 0.672478 |
Target: 5'- cGcCAGCGGCGCCGcgccgccggccgcGggGCGcGGCGc- -3' miRNA: 3'- aC-GUCGCCGCGGU-------------CuuUGUaCCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 19894 | 0.69 | 0.673508 |
Target: 5'- gGcCAGCaGCGCCAGGAGCugcgcGGCGc- -3' miRNA: 3'- aC-GUCGcCGCGGUCUUUGua---CCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 53749 | 0.69 | 0.704179 |
Target: 5'- cGUAGCGGCucgaguacgccGCCGaGAGCuUGGCGUa -3' miRNA: 3'- aCGUCGCCG-----------CGGUcUUUGuACCGCAc -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 68274 | 0.69 | 0.683778 |
Target: 5'- gGUcGCGGCGCCGGgcGCcacGGCGg- -3' miRNA: 3'- aCGuCGCCGCGGUCuuUGua-CCGCac -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 61778 | 0.69 | 0.663202 |
Target: 5'- gUGCuGCGGCGCgAGGccggccGGC-UGGCGUu -3' miRNA: 3'- -ACGuCGCCGCGgUCU------UUGuACCGCAc -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 21414 | 0.69 | 0.672478 |
Target: 5'- cGguGCGGCGUCucGGGccucgggggucgcGGCGUGGgGUGg -3' miRNA: 3'- aCguCGCCGCGG--UCU-------------UUGUACCgCAC- -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 122965 | 0.69 | 0.694005 |
Target: 5'- gGC-GCGGaCGCCGGcGACGggGGCGUc -3' miRNA: 3'- aCGuCGCC-GCGGUCuUUGUa-CCGCAc -5' |
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29383 | 5' | -56.7 | NC_006151.1 | + | 133352 | 0.69 | 0.683778 |
Target: 5'- cGCGGCGGCGgUGGuGGugGUGGUGgUGg -3' miRNA: 3'- aCGUCGCCGCgGUC-UUugUACCGC-AC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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