miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 17104 0.7 0.632168
Target:  5'- cGUcGgGGCGCCGGggGCuccGGCGg- -3'
miRNA:   3'- aCGuCgCCGCGGUCuuUGua-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 60112 0.7 0.642524
Target:  5'- gGCAGCGGCGCU-GGAAC-UGcGCGc- -3'
miRNA:   3'- aCGUCGCCGCGGuCUUUGuAC-CGCac -5'
29383 5' -56.7 NC_006151.1 + 31697 0.7 0.642524
Target:  5'- aGcCGGCcgcgccauugGGCGCCGGGcggAACggGGCGUGg -3'
miRNA:   3'- aC-GUCG----------CCGCGGUCU---UUGuaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 82739 0.7 0.641489
Target:  5'- cGCAGCgggaGGCGCaCGGAcgacgcgGGCAUGGUGa- -3'
miRNA:   3'- aCGUCG----CCGCG-GUCU-------UUGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 118886 0.7 0.611464
Target:  5'- cGCGGCGGCgacgcggccGCCGGcGgccucgagcgccGCAUGGCGUc -3'
miRNA:   3'- aCGUCGCCG---------CGGUCuU------------UGUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 99473 0.7 0.619741
Target:  5'- gUGaCGGCGGCGCU-GggGCuccccgagaagGGCGUGg -3'
miRNA:   3'- -AC-GUCGCCGCGGuCuuUGua---------CCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 101913 0.7 0.621812
Target:  5'- aUGCccaAGCGGCGCCGGccccCGUGGCc-- -3'
miRNA:   3'- -ACG---UCGCCGCGGUCuuu-GUACCGcac -5'
29383 5' -56.7 NC_006151.1 + 127850 0.7 0.632168
Target:  5'- cGCGGCuGCGCCGGAGGg--GGCGc- -3'
miRNA:   3'- aCGUCGcCGCGGUCUUUguaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 131118 0.7 0.632168
Target:  5'- gGCcGCGGCGCgGGAGGCcgcGGCGc- -3'
miRNA:   3'- aCGuCGCCGCGgUCUUUGua-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 58629 0.7 0.646665
Target:  5'- cGCAGCGGCucguagaaggccagcGCCGGGAggGCGcGGCGc- -3'
miRNA:   3'- aCGUCGCCG---------------CGGUCUU--UGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 21974 0.7 0.649769
Target:  5'- gUGguGCGGCGCCGGcAGCGcccaaagaucugccUGGgGUc -3'
miRNA:   3'- -ACguCGCCGCGGUCuUUGU--------------ACCgCAc -5'
29383 5' -56.7 NC_006151.1 + 129832 0.7 0.611464
Target:  5'- cGCGGCGGCGuagcCCAGcGACAcGGCcUGg -3'
miRNA:   3'- aCGUCGCCGC----GGUCuUUGUaCCGcAC- -5'
29383 5' -56.7 NC_006151.1 + 38381 0.7 0.632168
Target:  5'- aGCGcCGGCGCCGGcgGCGgcgGGCGc- -3'
miRNA:   3'- aCGUcGCCGCGGUCuuUGUa--CCGCac -5'
29383 5' -56.7 NC_006151.1 + 86726 0.7 0.632168
Target:  5'- cGCGGCGcGcCGCCGcGAGGCc-GGCGUGc -3'
miRNA:   3'- aCGUCGC-C-GCGGU-CUUUGuaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 133702 0.7 0.641489
Target:  5'- cGuCGGCGGCGacCCGGGucuuucucgagcuGACAUGGCGa- -3'
miRNA:   3'- aC-GUCGCCGC--GGUCU-------------UUGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 105730 0.7 0.642524
Target:  5'- cGCcguGCGcGCGCCuGAAGCAgcGCGUGg -3'
miRNA:   3'- aCGu--CGC-CGCGGuCUUUGUacCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 96388 0.7 0.652872
Target:  5'- cGCGcGCGGUGCCGGc-GCAcGGCGg- -3'
miRNA:   3'- aCGU-CGCCGCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 16978 0.7 0.652872
Target:  5'- gGC-GUGGCGCCAGGAGCG-GuuGUGg -3'
miRNA:   3'- aCGuCGCCGCGGUCUUUGUaCcgCAC- -5'
29383 5' -56.7 NC_006151.1 + 4279 0.7 0.652872
Target:  5'- cGCcGCGGCagGCCAGGAcGCA-GGCGUc -3'
miRNA:   3'- aCGuCGCCG--CGGUCUU-UGUaCCGCAc -5'
29383 5' -56.7 NC_006151.1 + 4081 0.7 0.652872
Target:  5'- -cCAGCGGCGCCAcGguGCG-GGCGa- -3'
miRNA:   3'- acGUCGCCGCGGU-CuuUGUaCCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.