miRNA display CGI


Results 21 - 40 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29383 5' -56.7 NC_006151.1 + 4991 0.73 0.461903
Target:  5'- gUGgAGCGGCGCUuccugcgcGGggGCcgGGCGg- -3'
miRNA:   3'- -ACgUCGCCGCGG--------UCuuUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 54642 0.73 0.434204
Target:  5'- aGCGGCGGCGCgAGcgcuGCGUGGaCGa- -3'
miRNA:   3'- aCGUCGCCGCGgUCuu--UGUACC-GCac -5'
29383 5' -56.7 NC_006151.1 + 53972 0.73 0.461903
Target:  5'- gGCGGCGGCGCCucc-GCG-GGCGUc -3'
miRNA:   3'- aCGUCGCCGCGGucuuUGUaCCGCAc -5'
29383 5' -56.7 NC_006151.1 + 30275 0.73 0.452565
Target:  5'- aGaCAGCGGCGCgGGggGag-GGUGUGu -3'
miRNA:   3'- aC-GUCGCCGCGgUCuuUguaCCGCAC- -5'
29383 5' -56.7 NC_006151.1 + 125551 0.73 0.470392
Target:  5'- cGCGGCGGCGUguacgugCAGAAcucCAUGcGCGUGc -3'
miRNA:   3'- aCGUCGCCGCG-------GUCUUu--GUAC-CGCAC- -5'
29383 5' -56.7 NC_006151.1 + 30955 0.72 0.519901
Target:  5'- cGCGGCGGC-CCGGGAGagcgGGCGg- -3'
miRNA:   3'- aCGUCGCCGcGGUCUUUgua-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 96735 0.72 0.519901
Target:  5'- gGCGGCgGGCGCgacgaCGGAGGcCAUGGCGg- -3'
miRNA:   3'- aCGUCG-CCGCG-----GUCUUU-GUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 60748 0.72 0.519901
Target:  5'- gGCAGCGGCGgCucgcGAAGgcgguCGUGGCGUa -3'
miRNA:   3'- aCGUCGCCGCgGu---CUUU-----GUACCGCAc -5'
29383 5' -56.7 NC_006151.1 + 84376 0.72 0.519901
Target:  5'- cGCGaucGCGGCGCgCGGGGACG-GGCGg- -3'
miRNA:   3'- aCGU---CGCCGCG-GUCUUUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 129286 0.72 0.490504
Target:  5'- cGCGGCgcguuccucgGGCGCgGcGGAGCAUGGCGg- -3'
miRNA:   3'- aCGUCG----------CCGCGgU-CUUUGUACCGCac -5'
29383 5' -56.7 NC_006151.1 + 135093 0.71 0.590823
Target:  5'- gGCGGCGGgGCCGG--GCG-GGCGg- -3'
miRNA:   3'- aCGUCGCCgCGGUCuuUGUaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 128047 0.71 0.580545
Target:  5'- gGCAGCGGCGgCAGcgGCGgcugcgcgggGGCGa- -3'
miRNA:   3'- aCGUCGCCGCgGUCuuUGUa---------CCGCac -5'
29383 5' -56.7 NC_006151.1 + 130884 0.71 0.580545
Target:  5'- gGCGGCGGCGgUGGAGGC--GGCGg- -3'
miRNA:   3'- aCGUCGCCGCgGUCUUUGuaCCGCac -5'
29383 5' -56.7 NC_006151.1 + 64535 0.71 0.549966
Target:  5'- cGCGGCcGCGUCGGggGCGgcgaGGcCGUGg -3'
miRNA:   3'- aCGUCGcCGCGGUCuuUGUa---CC-GCAC- -5'
29383 5' -56.7 NC_006151.1 + 37406 0.71 0.56011
Target:  5'- -aCGGCGGCGCCGGGGACucccGCGa- -3'
miRNA:   3'- acGUCGCCGCGGUCUUUGuac-CGCac -5'
29383 5' -56.7 NC_006151.1 + 73040 0.71 0.570305
Target:  5'- gGCGGUGGCGCggugggggugcgCGGGGuccGCGUGGCuGUGg -3'
miRNA:   3'- aCGUCGCCGCG------------GUCUU---UGUACCG-CAC- -5'
29383 5' -56.7 NC_006151.1 + 66795 0.71 0.580545
Target:  5'- gGCGGCGGCGgggcCCGGGGACGacgacGGCGa- -3'
miRNA:   3'- aCGUCGCCGC----GGUCUUUGUa----CCGCac -5'
29383 5' -56.7 NC_006151.1 + 137143 0.71 0.570305
Target:  5'- cGCGacGCGGCGCCGGAGA--UGGCc-- -3'
miRNA:   3'- aCGU--CGCCGCGGUCUUUguACCGcac -5'
29383 5' -56.7 NC_006151.1 + 96687 0.71 0.564182
Target:  5'- gGCGGCGucgaggaaugcguccGCGCCGGggGCGgcGGCGg- -3'
miRNA:   3'- aCGUCGC---------------CGCGGUCuuUGUa-CCGCac -5'
29383 5' -56.7 NC_006151.1 + 54404 0.71 0.56011
Target:  5'- cGCGGCcucGGCGCC-GAGGCGcUGGCGc- -3'
miRNA:   3'- aCGUCG---CCGCGGuCUUUGU-ACCGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.