miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 131653 0.67 0.945994
Target:  5'- ---gGUCGGGCGccgcagaucCGACCGCGcGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGCa--------GCUGGUGU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 2203 0.67 0.945994
Target:  5'- cGCggGCCGGugGgucuccacggCGcCCcCGGCGGCg -3'
miRNA:   3'- -CGaaCGGCUugCa---------GCuGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 45847 0.67 0.945994
Target:  5'- --cUGCCuGGACGUCGcgGCCACcgaGGC-GCa -3'
miRNA:   3'- cgaACGG-CUUGCAGC--UGGUG---UCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 103518 0.67 0.945994
Target:  5'- aGC-UGCUG-ACGUcCGACCcCGGCGcGCu -3'
miRNA:   3'- -CGaACGGCuUGCA-GCUGGuGUCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 109017 0.67 0.945994
Target:  5'- ---cGCCGGcgacugcuccaACGggcccacCGGCgGCAGCAGCa -3'
miRNA:   3'- cgaaCGGCU-----------UGCa------GCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 85030 0.67 0.945994
Target:  5'- cGCaUGUCGcgcaccuucaugGGCGUgaCGACCACGGCGcuGCa -3'
miRNA:   3'- -CGaACGGC------------UUGCA--GCUGGUGUCGU--CG- -5'
29384 3' -53.5 NC_006151.1 + 63450 0.67 0.943276
Target:  5'- gGCcagGUCGAGCGUcCGguucugcucgcagggGCgGCGGCGGCg -3'
miRNA:   3'- -CGaa-CGGCUUGCA-GC---------------UGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 133397 0.67 0.942815
Target:  5'- gGCcgggGCCGAGCGggcggucUUGGCCGCggacgcgggggucuuGGCGGCc -3'
miRNA:   3'- -CGaa--CGGCUUGC-------AGCUGGUG---------------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 48625 0.67 0.941416
Target:  5'- cGCUucUGCCucuAACGcCGccaccgccGCUGCAGCAGCa -3'
miRNA:   3'- -CGA--ACGGc--UUGCaGC--------UGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 65807 0.67 0.941416
Target:  5'- cGCggacgUGCCGcggugGAUGggCGGCCGCGcCAGCg -3'
miRNA:   3'- -CGa----ACGGC-----UUGCa-GCUGGUGUcGUCG- -5'
29384 3' -53.5 NC_006151.1 + 130344 0.67 0.941416
Target:  5'- cGCgcGCCGcGGCGUCGugguugacgGCCGCGcgcgccGCGGCg -3'
miRNA:   3'- -CGaaCGGC-UUGCAGC---------UGGUGU------CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 31749 0.67 0.936593
Target:  5'- ---cGCCGGggACG-CGcCUGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCU--UGCaGCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 80909 0.67 0.936593
Target:  5'- ---gGCCuuGACGUCG-CCGCcguGCAGCg -3'
miRNA:   3'- cgaaCGGc-UUGCAGCuGGUGu--CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 86850 0.67 0.936593
Target:  5'- ---cGCCGAGCGcagcgcccggCGACUACAucuucgugcccGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGCa---------GCUGGUGU-----------CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 118884 0.67 0.936593
Target:  5'- gGCgcgGCgGcGACG-CGGCCGcCGGCGGCc -3'
miRNA:   3'- -CGaa-CGgC-UUGCaGCUGGU-GUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 131752 0.67 0.936593
Target:  5'- gGCgaGgCGAccgucGCGgucgCGACCGCGGCcGCg -3'
miRNA:   3'- -CGaaCgGCU-----UGCa---GCUGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 20776 0.67 0.936593
Target:  5'- cGCgcGCCGGGCGagCGGCUcgcgcuugcGCAGaCAGCc -3'
miRNA:   3'- -CGaaCGGCUUGCa-GCUGG---------UGUC-GUCG- -5'
29384 3' -53.5 NC_006151.1 + 72838 0.67 0.936593
Target:  5'- cGCUUGaacugguacucCCGuugcuCGUCGGCgagGCGGCGGCg -3'
miRNA:   3'- -CGAAC-----------GGCuu---GCAGCUGg--UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 100646 0.67 0.931525
Target:  5'- cGCUgcGCCGcgcCGUCGACgagCGCGGCGuGCu -3'
miRNA:   3'- -CGAa-CGGCuu-GCAGCUG---GUGUCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 92198 0.67 0.931525
Target:  5'- ---cGCCGAcGCGcCG-CCGCGGCcGCg -3'
miRNA:   3'- cgaaCGGCU-UGCaGCuGGUGUCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.