Results 41 - 60 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29384 | 3' | -53.5 | NC_006151.1 | + | 118620 | 0.66 | 0.954429 |
Target: 5'- --aUGCCGGACGUCaACCgGCucGUGGCc -3' miRNA: 3'- cgaACGGCUUGCAGcUGG-UGu-CGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 105663 | 0.66 | 0.954429 |
Target: 5'- cGCcUGCaguucuACG-CGGCCuACGGCGGCg -3' miRNA: 3'- -CGaACGgcu---UGCaGCUGG-UGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 106514 | 0.66 | 0.954429 |
Target: 5'- cGCgccgUGCCGGGCGcgcUGGCCACcuucaccgugcuGGCGcGCa -3' miRNA: 3'- -CGa---ACGGCUUGCa--GCUGGUG------------UCGU-CG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 83363 | 0.66 | 0.954429 |
Target: 5'- cGCgcGCgCGGGCG-CGcaggcGCCGCAGguGCu -3' miRNA: 3'- -CGaaCG-GCUUGCaGC-----UGGUGUCguCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 99902 | 0.66 | 0.954429 |
Target: 5'- cGCaggUGCUGAcguggGCGcgCGACUACGGCgccGGCc -3' miRNA: 3'- -CGa--ACGGCU-----UGCa-GCUGGUGUCG---UCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 90224 | 0.67 | 0.951998 |
Target: 5'- cGCcgGCCGAgaucGCGUCGcggcuggccagcGCCcagcccgcggcgaagACGGCGGCg -3' miRNA: 3'- -CGaaCGGCU----UGCAGC------------UGG---------------UGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 38383 | 0.67 | 0.950331 |
Target: 5'- ---cGCCG-GCGcCGGCgGCGGCGGg -3' miRNA: 3'- cgaaCGGCuUGCaGCUGgUGUCGUCg -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 102769 | 0.67 | 0.950331 |
Target: 5'- aGCUggcGCUGAugGUCGGcgacgccuCCGCGaguacuuucugcGCGGCg -3' miRNA: 3'- -CGAa--CGGCUugCAGCU--------GGUGU------------CGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 87388 | 0.67 | 0.950331 |
Target: 5'- ---cGCCcaGGugGUC--CCGCAGCAGCc -3' miRNA: 3'- cgaaCGG--CUugCAGcuGGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 3984 | 0.67 | 0.950331 |
Target: 5'- gGCgaGCCGGccgcggccACGUUGGCCGgGGCGa- -3' miRNA: 3'- -CGaaCGGCU--------UGCAGCUGGUgUCGUcg -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 5024 | 0.67 | 0.950331 |
Target: 5'- gGCUccgggGCCGGGgcCGgggaGGCCGCGGCGGa -3' miRNA: 3'- -CGAa----CGGCUU--GCag--CUGGUGUCGUCg -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 50007 | 0.67 | 0.950331 |
Target: 5'- uGCgcGCCGcGCGcgCGGCC-CGcGCGGCg -3' miRNA: 3'- -CGaaCGGCuUGCa-GCUGGuGU-CGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 57724 | 0.67 | 0.950331 |
Target: 5'- gGCUUGaCCGcGCG-CGcCCGCA-CGGCg -3' miRNA: 3'- -CGAAC-GGCuUGCaGCuGGUGUcGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 64074 | 0.67 | 0.950331 |
Target: 5'- --aUGCCGGuGCG-CGGguCCAgCAGCAGCc -3' miRNA: 3'- cgaACGGCU-UGCaGCU--GGU-GUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 65939 | 0.67 | 0.950331 |
Target: 5'- ---cGCCGGcccaguccuCGUCGAgCGCGGCcGCg -3' miRNA: 3'- cgaaCGGCUu--------GCAGCUgGUGUCGuCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 82377 | 0.67 | 0.950331 |
Target: 5'- ---cGCCGGgcGCGUCGaagGCCACgAGCuccGCg -3' miRNA: 3'- cgaaCGGCU--UGCAGC---UGGUG-UCGu--CG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 103358 | 0.67 | 0.950331 |
Target: 5'- cGCgccGCCGAGCagaaCGACCucuACAuGCGGCu -3' miRNA: 3'- -CGaa-CGGCUUGca--GCUGG---UGU-CGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 103918 | 0.67 | 0.950331 |
Target: 5'- cGCgcgGCCGccGugGagGAgCCGCAGCuGCa -3' miRNA: 3'- -CGaa-CGGC--UugCagCU-GGUGUCGuCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 100514 | 0.67 | 0.950331 |
Target: 5'- cGCUgugcGCCGAccACG-CGcGCCugAGCAaGCu -3' miRNA: 3'- -CGAa---CGGCU--UGCaGC-UGGugUCGU-CG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 109017 | 0.67 | 0.945994 |
Target: 5'- ---cGCCGGcgacugcuccaACGggcccacCGGCgGCAGCAGCa -3' miRNA: 3'- cgaaCGGCU-----------UGCa------GCUGgUGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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