miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 96390 0.66 0.96533
Target:  5'- cGCgcggUGCCGGcgcACGgCGGCCGCcaccGCGGg -3'
miRNA:   3'- -CGa---ACGGCU---UGCaGCUGGUGu---CGUCg -5'
29384 3' -53.5 NC_006151.1 + 99592 0.66 0.96533
Target:  5'- gGCggcgGCCGAGCGcCGcgccgggcugGCgCACAGCGccGCg -3'
miRNA:   3'- -CGaa--CGGCUUGCaGC----------UG-GUGUCGU--CG- -5'
29384 3' -53.5 NC_006151.1 + 123030 0.66 0.96533
Target:  5'- ---cGCCGuGGCGUgggcggaccugcCGGCCGCGGCGcuGCg -3'
miRNA:   3'- cgaaCGGC-UUGCA------------GCUGGUGUCGU--CG- -5'
29384 3' -53.5 NC_006151.1 + 650 0.66 0.96533
Target:  5'- gGCUUcCgGGGCG-CGGCCGgGGCGGg -3'
miRNA:   3'- -CGAAcGgCUUGCaGCUGGUgUCGUCg -5'
29384 3' -53.5 NC_006151.1 + 22790 0.66 0.96533
Target:  5'- cGCgcacgUGCUGGGcCGUcucccCGGCCGuCAGguGCa -3'
miRNA:   3'- -CGa----ACGGCUU-GCA-----GCUGGU-GUCguCG- -5'
29384 3' -53.5 NC_006151.1 + 38383 0.67 0.950331
Target:  5'- ---cGCCG-GCGcCGGCgGCGGCGGg -3'
miRNA:   3'- cgaaCGGCuUGCaGCUGgUGUCGUCg -5'
29384 3' -53.5 NC_006151.1 + 102769 0.67 0.950331
Target:  5'- aGCUggcGCUGAugGUCGGcgacgccuCCGCGaguacuuucugcGCGGCg -3'
miRNA:   3'- -CGAa--CGGCUugCAGCU--------GGUGU------------CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 87388 0.67 0.950331
Target:  5'- ---cGCCcaGGugGUC--CCGCAGCAGCc -3'
miRNA:   3'- cgaaCGG--CUugCAGcuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 3984 0.67 0.950331
Target:  5'- gGCgaGCCGGccgcggccACGUUGGCCGgGGCGa- -3'
miRNA:   3'- -CGaaCGGCU--------UGCAGCUGGUgUCGUcg -5'
29384 3' -53.5 NC_006151.1 + 5024 0.67 0.950331
Target:  5'- gGCUccgggGCCGGGgcCGgggaGGCCGCGGCGGa -3'
miRNA:   3'- -CGAa----CGGCUU--GCag--CUGGUGUCGUCg -5'
29384 3' -53.5 NC_006151.1 + 85030 0.67 0.945994
Target:  5'- cGCaUGUCGcgcaccuucaugGGCGUgaCGACCACGGCGcuGCa -3'
miRNA:   3'- -CGaACGGC------------UUGCA--GCUGGUGUCGU--CG- -5'
29384 3' -53.5 NC_006151.1 + 50007 0.67 0.950331
Target:  5'- uGCgcGCCGcGCGcgCGGCC-CGcGCGGCg -3'
miRNA:   3'- -CGaaCGGCuUGCa-GCUGGuGU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 57724 0.67 0.950331
Target:  5'- gGCUUGaCCGcGCG-CGcCCGCA-CGGCg -3'
miRNA:   3'- -CGAAC-GGCuUGCaGCuGGUGUcGUCG- -5'
29384 3' -53.5 NC_006151.1 + 64074 0.67 0.950331
Target:  5'- --aUGCCGGuGCG-CGGguCCAgCAGCAGCc -3'
miRNA:   3'- cgaACGGCU-UGCaGCU--GGU-GUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 65939 0.67 0.950331
Target:  5'- ---cGCCGGcccaguccuCGUCGAgCGCGGCcGCg -3'
miRNA:   3'- cgaaCGGCUu--------GCAGCUgGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 82377 0.67 0.950331
Target:  5'- ---cGCCGGgcGCGUCGaagGCCACgAGCuccGCg -3'
miRNA:   3'- cgaaCGGCU--UGCAGC---UGGUG-UCGu--CG- -5'
29384 3' -53.5 NC_006151.1 + 103358 0.67 0.950331
Target:  5'- cGCgccGCCGAGCagaaCGACCucuACAuGCGGCu -3'
miRNA:   3'- -CGaa-CGGCUUGca--GCUGG---UGU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 103918 0.67 0.950331
Target:  5'- cGCgcgGCCGccGugGagGAgCCGCAGCuGCa -3'
miRNA:   3'- -CGaa-CGGC--UugCagCU-GGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 100514 0.67 0.950331
Target:  5'- cGCUgugcGCCGAccACG-CGcGCCugAGCAaGCu -3'
miRNA:   3'- -CGAa---CGGCU--UGCaGC-UGGugUCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 109017 0.67 0.945994
Target:  5'- ---cGCCGGcgacugcuccaACGggcccacCGGCgGCAGCAGCa -3'
miRNA:   3'- cgaaCGGCU-----------UGCa------GCUGgUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.