Results 41 - 60 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29384 | 3' | -53.5 | NC_006151.1 | + | 58141 | 0.66 | 0.968517 |
Target: 5'- ---cGCCGuACG-CGGCCGCgugccaccGGCGGUa -3' miRNA: 3'- cgaaCGGCuUGCaGCUGGUG--------UCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 74425 | 0.66 | 0.968517 |
Target: 5'- --gUGCUGAAagugcgcgcCGUUGACgCGCAGCuccGGCa -3' miRNA: 3'- cgaACGGCUU---------GCAGCUG-GUGUCG---UCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 135955 | 0.66 | 0.968517 |
Target: 5'- cGCggcGCgGGACGUCcucgaGGCCAUggacgaGGCGGCc -3' miRNA: 3'- -CGaa-CGgCUUGCAG-----CUGGUG------UCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 57879 | 0.65 | 0.97062 |
Target: 5'- ---cGCCGGcagACGUCGcagcgcaggcgcagGCCGCAGCucacgGGCc -3' miRNA: 3'- cgaaCGGCU---UGCAGC--------------UGGUGUCG-----UCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 68957 | 0.65 | 0.97062 |
Target: 5'- gGCUcGCggcgcacggacucgCGGACGcCGGCCAgCAGCGcGCg -3' miRNA: 3'- -CGAaCG--------------GCUUGCaGCUGGU-GUCGU-CG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 22790 | 0.66 | 0.96533 |
Target: 5'- cGCgcacgUGCUGGGcCGUcucccCGGCCGuCAGguGCa -3' miRNA: 3'- -CGa----ACGGCUU-GCA-----GCUGGU-GUCguCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 650 | 0.66 | 0.96533 |
Target: 5'- gGCUUcCgGGGCG-CGGCCGgGGCGGg -3' miRNA: 3'- -CGAAcGgCUUGCaGCUGGUgUCGUCg -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 76325 | 0.66 | 0.961924 |
Target: 5'- --gUGCaCGGGCugGUCGGCCGgGuGCGGCc -3' miRNA: 3'- cgaACG-GCUUG--CAGCUGGUgU-CGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 68138 | 0.66 | 0.961924 |
Target: 5'- cGCUcccGCgGAGCGUggucguggucaCGGCCGCcaccagcgcguaGGCGGCg -3' miRNA: 3'- -CGAa--CGgCUUGCA-----------GCUGGUG------------UCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 72154 | 0.66 | 0.961924 |
Target: 5'- ---aGCCGcaggcacuCGUCG-CCgaGCAGCGGCg -3' miRNA: 3'- cgaaCGGCuu------GCAGCuGG--UGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 78695 | 0.66 | 0.961924 |
Target: 5'- cGCcgGCCGGGgccuCGUCG-CCGCGaCGGCg -3' miRNA: 3'- -CGaaCGGCUU----GCAGCuGGUGUcGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 104895 | 0.66 | 0.961924 |
Target: 5'- cGCgaggUGgUGGACG-CGGCgGCGGCGcGCg -3' miRNA: 3'- -CGa---ACgGCUUGCaGCUGgUGUCGU-CG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 121684 | 0.66 | 0.961924 |
Target: 5'- aGCggGCCGAcc--CGGCCAUggcggAGCGGCg -3' miRNA: 3'- -CGaaCGGCUugcaGCUGGUG-----UCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 142234 | 0.66 | 0.961924 |
Target: 5'- ---cGCCGGgucgcgacgagGCGUCGGUCAUcGCGGCg -3' miRNA: 3'- cgaaCGGCU-----------UGCAGCUGGUGuCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 59374 | 0.66 | 0.963313 |
Target: 5'- cGCgcgGCCGu-CGUCGcguccagcacguggcACCgcagcaccucgaGCAGCAGCg -3' miRNA: 3'- -CGaa-CGGCuuGCAGC---------------UGG------------UGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 97332 | 0.66 | 0.964667 |
Target: 5'- cGCggGUCGuugaacagguacGCGgggaaGGCCGCGGCGGCg -3' miRNA: 3'- -CGaaCGGCu-----------UGCag---CUGGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 86821 | 0.66 | 0.96533 |
Target: 5'- cGCccgGCCca--GUgCGGCCAUGGCAGCc -3' miRNA: 3'- -CGaa-CGGcuugCA-GCUGGUGUCGUCG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 96390 | 0.66 | 0.96533 |
Target: 5'- cGCgcggUGCCGGcgcACGgCGGCCGCcaccGCGGg -3' miRNA: 3'- -CGa---ACGGCU---UGCaGCUGGUGu---CGUCg -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 99592 | 0.66 | 0.96533 |
Target: 5'- gGCggcgGCCGAGCGcCGcgccgggcugGCgCACAGCGccGCg -3' miRNA: 3'- -CGaa--CGGCUUGCaGC----------UG-GUGUCGU--CG- -5' |
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29384 | 3' | -53.5 | NC_006151.1 | + | 123030 | 0.66 | 0.96533 |
Target: 5'- ---cGCCGuGGCGUgggcggaccugcCGGCCGCGGCGcuGCg -3' miRNA: 3'- cgaaCGGC-UUGCA------------GCUGGUGUCGU--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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