miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 84613 0.72 0.743409
Target:  5'- cGCgcGCCGccGCG-CGGCCGCcGCGGCg -3'
miRNA:   3'- -CGaaCGGCu-UGCaGCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 57494 0.72 0.752249
Target:  5'- ---aGgCGAcgcgcacGCGcUCGGCCGCGGCGGCg -3'
miRNA:   3'- cgaaCgGCU-------UGC-AGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 98144 0.72 0.753226
Target:  5'- aGUgUGCCcGGCG-CGACCACcaucAGCAGCc -3'
miRNA:   3'- -CGaACGGcUUGCaGCUGGUG----UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 5637 0.72 0.753226
Target:  5'- ---cGCCGGGCGccgagacCGGCC-CGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGCa------GCUGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 106751 0.71 0.761967
Target:  5'- gGCUcgccGCCGAgcagcgcgacgcGCGUgagcgccuggaccUGGCCGCGGCGGCg -3'
miRNA:   3'- -CGAa---CGGCU------------UGCA-------------GCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 89719 0.71 0.762933
Target:  5'- gGCggcGCCGGcCG-CGGCCGCGGUGGUg -3'
miRNA:   3'- -CGaa-CGGCUuGCaGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 50670 0.71 0.762933
Target:  5'- uGCgcgGCCGcacccccGCGcCG-CCGCGGCAGCg -3'
miRNA:   3'- -CGaa-CGGCu------UGCaGCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 35980 0.71 0.771567
Target:  5'- cGCcgcgGCCGAggaagagggcaucGCGUcCGGCCccgACGGCGGCa -3'
miRNA:   3'- -CGaa--CGGCU-------------UGCA-GCUGG---UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 135096 0.71 0.77252
Target:  5'- gGCgggGCCGGGCG--GGCgGCGGUAGCg -3'
miRNA:   3'- -CGaa-CGGCUUGCagCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 57447 0.71 0.77252
Target:  5'- cGCggcgGCCcccGCGUCGGCCaggugccgcgccGCGGCGGCc -3'
miRNA:   3'- -CGaa--CGGcu-UGCAGCUGG------------UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 59162 0.71 0.77252
Target:  5'- ---gGCCG-GCGUCG--CGCAGCAGCg -3'
miRNA:   3'- cgaaCGGCuUGCAGCugGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 71687 0.71 0.781978
Target:  5'- cGCgUGCCGAGCGugUCG-CC-CAGCcGCg -3'
miRNA:   3'- -CGaACGGCUUGC--AGCuGGuGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 60373 0.71 0.781978
Target:  5'- aGCUgaGCCcGACGgUGACCACGGUGGUg -3'
miRNA:   3'- -CGAa-CGGcUUGCaGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 109278 0.71 0.785723
Target:  5'- cGCUgGCCgcccccuccgagaucGAGCGgcccgccgccUCGGCgGCAGCAGCg -3'
miRNA:   3'- -CGAaCGG---------------CUUGC----------AGCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 86257 0.71 0.791297
Target:  5'- uGCUgGCCGuggucGACGaCGACCGCGGCcccuucuuccucGGCg -3'
miRNA:   3'- -CGAaCGGC-----UUGCaGCUGGUGUCG------------UCG- -5'
29384 3' -53.5 NC_006151.1 + 84788 0.71 0.791297
Target:  5'- cGCgccGCCGAggagGCGcccgaggCGACCGCGGCcGCg -3'
miRNA:   3'- -CGaa-CGGCU----UGCa------GCUGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 131864 0.71 0.791297
Target:  5'- cGCgcGCCGGcgGCGUCGGguCgCAgGGCAGCa -3'
miRNA:   3'- -CGaaCGGCU--UGCAGCU--G-GUgUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 132166 0.71 0.791297
Target:  5'- aGCUgcgcgGCCGGcaccgGCG-CGcCCgACAGCAGCa -3'
miRNA:   3'- -CGAa----CGGCU-----UGCaGCuGG-UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 69586 0.71 0.800467
Target:  5'- ---cGCCGcGACGagcUCGGCCGC-GCGGCg -3'
miRNA:   3'- cgaaCGGC-UUGC---AGCUGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 57940 0.71 0.800467
Target:  5'- cGCggaaGCCGAGCG-CgGGCCACAGCccguccgugAGCc -3'
miRNA:   3'- -CGaa--CGGCUUGCaG-CUGGUGUCG---------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.