miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 20723 0.74 0.64129
Target:  5'- gGCgggGCCGGGCGcgaGACgaACAGCAGCc -3'
miRNA:   3'- -CGaa-CGGCUUGCag-CUGg-UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 50605 0.74 0.64129
Target:  5'- aGCggGCCccGCGcCG-CCGCGGCAGCg -3'
miRNA:   3'- -CGaaCGGcuUGCaGCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 81513 0.73 0.662061
Target:  5'- aGCgcgGCCcgcguGAGCucggCGGCCGCGGCGGCg -3'
miRNA:   3'- -CGaa-CGG-----CUUGca--GCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 72753 0.73 0.662061
Target:  5'- ---cGCCGAGuCGcUGGCgCACAGCGGCg -3'
miRNA:   3'- cgaaCGGCUU-GCaGCUG-GUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 96211 0.73 0.672414
Target:  5'- cGCgucGCCGuGGCGgCGGCCGCGGCgaGGCg -3'
miRNA:   3'- -CGaa-CGGC-UUGCaGCUGGUGUCG--UCG- -5'
29384 3' -53.5 NC_006151.1 + 73272 0.73 0.672414
Target:  5'- cGgUUGCCG-GCGUUGACCgu-GCGGCg -3'
miRNA:   3'- -CgAACGGCuUGCAGCUGGuguCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 2276 0.73 0.682732
Target:  5'- aGCacgGCCG-GCGgggCGcCCGCGGCGGCg -3'
miRNA:   3'- -CGaa-CGGCuUGCa--GCuGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 6392 0.73 0.693008
Target:  5'- aGCgagGCCGGGCGcCGAgCGCggagagcgGGCGGCg -3'
miRNA:   3'- -CGaa-CGGCUUGCaGCUgGUG--------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 111990 0.73 0.703231
Target:  5'- aGCggUGCgGcuacGACGUCGA-CGCGGCGGCg -3'
miRNA:   3'- -CGa-ACGgC----UUGCAGCUgGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 103799 0.73 0.703231
Target:  5'- cGCUgcagGCCGcGCuGUCGGCgGCcguGGCGGCg -3'
miRNA:   3'- -CGAa---CGGCuUG-CAGCUGgUG---UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 94045 0.72 0.713392
Target:  5'- cGCgcGCCGcGGCGUCG-CCGCGGaaCAGCa -3'
miRNA:   3'- -CGaaCGGC-UUGCAGCuGGUGUC--GUCG- -5'
29384 3' -53.5 NC_006151.1 + 137903 0.72 0.713392
Target:  5'- ---cGCC-AAgGUCGACgGCGGCGGCu -3'
miRNA:   3'- cgaaCGGcUUgCAGCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 54738 0.72 0.717437
Target:  5'- aGCUcGCCGAggccaugcgcgGCGUcaccaucauggacuaCGACCGCGuGCAGCu -3'
miRNA:   3'- -CGAaCGGCU-----------UGCA---------------GCUGGUGU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 75640 0.72 0.723482
Target:  5'- gGCUUGCCGu-CGUCGggggccggcucGCCGCcgAGCAGg -3'
miRNA:   3'- -CGAACGGCuuGCAGC-----------UGGUG--UCGUCg -5'
29384 3' -53.5 NC_006151.1 + 40519 0.72 0.723482
Target:  5'- ---gGCCGGAgGU-GGCUGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCUUgCAgCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 18130 0.72 0.723482
Target:  5'- cGCUgggGUCGAACGuguccaugUCGGCgGgGGCGGCg -3'
miRNA:   3'- -CGAa--CGGCUUGC--------AGCUGgUgUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 64295 0.72 0.723482
Target:  5'- cGCgUUGUCGGGCGU--GCCGCAGCGcGCc -3'
miRNA:   3'- -CG-AACGGCUUGCAgcUGGUGUCGU-CG- -5'
29384 3' -53.5 NC_006151.1 + 52820 0.72 0.733491
Target:  5'- ---gGCCG-GCGUUGGCCGCgAGcCAGCg -3'
miRNA:   3'- cgaaCGGCuUGCAGCUGGUG-UC-GUCG- -5'
29384 3' -53.5 NC_006151.1 + 66768 0.72 0.742421
Target:  5'- cGCgacgGCCGcccucggGACGgCGGCgGCGGCGGCg -3'
miRNA:   3'- -CGaa--CGGC-------UUGCaGCUGgUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 5322 0.72 0.743409
Target:  5'- aGC-UGCUGAAgcCG-CGGCCGCGGCGGa -3'
miRNA:   3'- -CGaACGGCUU--GCaGCUGGUGUCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.