miRNA display CGI


Results 21 - 40 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 3' -53.5 NC_006151.1 + 11052 0.66 0.968517
Target:  5'- gGCccgGCCuGGACG-CgGGCCACAcuguGCGGCg -3'
miRNA:   3'- -CGaa-CGG-CUUGCaG-CUGGUGU----CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 11226 0.75 0.579057
Target:  5'- gGCUUcucCCGGgccGCGagGGCCGCGGCGGCg -3'
miRNA:   3'- -CGAAc--GGCU---UGCagCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 12667 0.66 0.954429
Target:  5'- ---cGCCGc-CG-CGGCCGCAGCcGCc -3'
miRNA:   3'- cgaaCGGCuuGCaGCUGGUGUCGuCG- -5'
29384 3' -53.5 NC_006151.1 + 17966 0.68 0.92621
Target:  5'- cGCcUGCCG-GCGUC--CCAC-GCGGCg -3'
miRNA:   3'- -CGaACGGCuUGCAGcuGGUGuCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 18130 0.72 0.723482
Target:  5'- cGCUgggGUCGAACGuguccaugUCGGCgGgGGCGGCg -3'
miRNA:   3'- -CGAa--CGGCUUGC--------AGCUGgUgUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 18795 0.71 0.809481
Target:  5'- aGCUccuugaUGaCCGuGACGuacUCGGCCGCGGUGGCg -3'
miRNA:   3'- -CGA------AC-GGC-UUGC---AGCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 19175 0.66 0.968517
Target:  5'- cGCgaGUCGcccAUGUCcgaGACCACGcGCGGCa -3'
miRNA:   3'- -CGaaCGGCu--UGCAG---CUGGUGU-CGUCG- -5'
29384 3' -53.5 NC_006151.1 + 20307 0.74 0.64129
Target:  5'- cGCccGCCGuGGCGUUGGCgGCGGCgAGCa -3'
miRNA:   3'- -CGaaCGGC-UUGCAGCUGgUGUCG-UCG- -5'
29384 3' -53.5 NC_006151.1 + 20723 0.74 0.64129
Target:  5'- gGCgggGCCGGGCGcgaGACgaACAGCAGCc -3'
miRNA:   3'- -CGaa-CGGCUUGCag-CUGg-UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 20776 0.67 0.936593
Target:  5'- cGCgcGCCGGGCGagCGGCUcgcgcuugcGCAGaCAGCc -3'
miRNA:   3'- -CGaaCGGCUUGCa-GCUGG---------UGUC-GUCG- -5'
29384 3' -53.5 NC_006151.1 + 21587 0.68 0.895951
Target:  5'- cGCgggGUCGAugGCGUaCGGCgugGCGGCGGCg -3'
miRNA:   3'- -CGaa-CGGCU--UGCA-GCUGg--UGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 22314 0.74 0.605946
Target:  5'- ---cGCCGAGCGUCGuccgggcgaccagcGCCGCcaauagcgcugcgAGCAGCa -3'
miRNA:   3'- cgaaCGGCUUGCAGC--------------UGGUG-------------UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 22790 0.66 0.96533
Target:  5'- cGCgcacgUGCUGGGcCGUcucccCGGCCGuCAGguGCa -3'
miRNA:   3'- -CGa----ACGGCUU-GCA-----GCUGGU-GUCguCG- -5'
29384 3' -53.5 NC_006151.1 + 22909 0.7 0.818328
Target:  5'- gGCgaGaCGAAgGUCGGCUcCGGCGGCa -3'
miRNA:   3'- -CGaaCgGCUUgCAGCUGGuGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 23144 0.68 0.91484
Target:  5'- ---cGCCGGGCccUCGGCgGgAGCGGCg -3'
miRNA:   3'- cgaaCGGCUUGc-AGCUGgUgUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 25288 0.68 0.91484
Target:  5'- uGCUUgGCCGcgggGACGUgGGCgaACGGguGCg -3'
miRNA:   3'- -CGAA-CGGC----UUGCAgCUGg-UGUCguCG- -5'
29384 3' -53.5 NC_006151.1 + 29590 0.68 0.91484
Target:  5'- ---cGC--GGCGgcugCGGCCGCGGCGGCg -3'
miRNA:   3'- cgaaCGgcUUGCa---GCUGGUGUCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 29959 0.68 0.91484
Target:  5'- ---gGCCGAGC-UCgGACCGCGGCGa- -3'
miRNA:   3'- cgaaCGGCUUGcAG-CUGGUGUCGUcg -5'
29384 3' -53.5 NC_006151.1 + 31562 0.71 0.809481
Target:  5'- cGCggUGCgCGAACGU-GAUCACgggggGGCGGCg -3'
miRNA:   3'- -CGa-ACG-GCUUGCAgCUGGUG-----UCGUCG- -5'
29384 3' -53.5 NC_006151.1 + 31749 0.67 0.936593
Target:  5'- ---cGCCGGggACG-CGcCUGCGGCGGCg -3'
miRNA:   3'- cgaaCGGCU--UGCaGCuGGUGUCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.