Results 61 - 80 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29384 | 5' | -61 | NC_006151.1 | + | 90137 | 0.7 | 0.482829 |
Target: 5'- cGGGGCGguaGUGCgCGUCGggcCCGcuGGCGa -3' miRNA: 3'- -CCCCGCag-CGCGaGCAGCa--GGC--UCGC- -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 90668 | 0.67 | 0.664144 |
Target: 5'- cGGGGCGgCGggcCGCUUGUCccCCGcGGCGg -3' miRNA: 3'- -CCCCGCaGC---GCGAGCAGcaGGC-UCGC- -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 91564 | 0.72 | 0.40025 |
Target: 5'- cGGGGCGauggcggCGCGCgcgugcuccaggugcUCGUCG-CUGAGCa -3' miRNA: 3'- -CCCCGCa------GCGCG---------------AGCAGCaGGCUCGc -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 92684 | 0.78 | 0.16869 |
Target: 5'- cGGGGaCG-CGCGCUCGcCGcgcgCCGAGCGc -3' miRNA: 3'- -CCCC-GCaGCGCGAGCaGCa---GGCUCGC- -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 94982 | 0.66 | 0.702727 |
Target: 5'- cGGaGCGagaCGCGCUCGUaggCGUCaaaGGGCa -3' miRNA: 3'- cCC-CGCa--GCGCGAGCA---GCAGg--CUCGc -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 95445 | 0.66 | 0.749681 |
Target: 5'- gGGcGGCGcCGCGCg---UGUCCGuGUGg -3' miRNA: 3'- -CC-CCGCaGCGCGagcaGCAGGCuCGC- -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 95639 | 0.68 | 0.615436 |
Target: 5'- aGGuGCGagGCGCg-GUCGUCaaaGAGCGu -3' miRNA: 3'- cCC-CGCagCGCGagCAGCAGg--CUCGC- -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 96602 | 0.7 | 0.519598 |
Target: 5'- cGGGCGcgggCGCGCcgaCGUCGUgcCCGAGgGc -3' miRNA: 3'- cCCCGCa---GCGCGa--GCAGCA--GGCUCgC- -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 97385 | 0.71 | 0.430177 |
Target: 5'- gGGGGCGUCG-GC-C-UCGUCCGuGCc -3' miRNA: 3'- -CCCCGCAGCgCGaGcAGCAGGCuCGc -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 97847 | 0.66 | 0.730189 |
Target: 5'- --uGCG-CGCGCagcgCGUCGUCCGcguucucGGCGg -3' miRNA: 3'- cccCGCaGCGCGa---GCAGCAGGC-------UCGC- -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 98656 | 0.66 | 0.749681 |
Target: 5'- cGGGCG-CGCGCUCcgccgacgaCGUCCuGGCc -3' miRNA: 3'- cCCCGCaGCGCGAGca-------GCAGGcUCGc -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 102444 | 0.71 | 0.438721 |
Target: 5'- cGGGCGcuggaCGCGCUCGa-GUCCGGGgGc -3' miRNA: 3'- cCCCGCa----GCGCGAGCagCAGGCUCgC- -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 102692 | 0.68 | 0.615436 |
Target: 5'- gGGGGCGcccggCGCGggCGgcgCGgCCGAGCc -3' miRNA: 3'- -CCCCGCa----GCGCgaGCa--GCaGGCUCGc -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 107090 | 0.71 | 0.456094 |
Target: 5'- uGGcGGUGUCGCGCgugcucugggCGcCGcCCGAGCc -3' miRNA: 3'- -CC-CCGCAGCGCGa---------GCaGCaGGCUCGc -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 109548 | 0.67 | 0.65442 |
Target: 5'- cGGaGGCGcCGUGgaCGUgGcCCGAGCc -3' miRNA: 3'- -CC-CCGCaGCGCgaGCAgCaGGCUCGc -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 111454 | 0.66 | 0.740446 |
Target: 5'- aGGaGGCGcUGCGUcugcgaggCGUCGUCgGGGCc -3' miRNA: 3'- -CC-CCGCaGCGCGa-------GCAGCAGgCUCGc -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 111939 | 0.68 | 0.595985 |
Target: 5'- aGGGUgccgcucaugGUCGUcgUCGUCGUCgCGAGCGu -3' miRNA: 3'- cCCCG----------CAGCGcgAGCAGCAG-GCUCGC- -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 112217 | 0.71 | 0.456094 |
Target: 5'- uGGGcGCaGUCGCGCUCGcUCGUcgCCGccgccaGGCGc -3' miRNA: 3'- -CCC-CG-CAGCGCGAGC-AGCA--GGC------UCGC- -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 113107 | 0.66 | 0.749681 |
Target: 5'- gGGGGCGgggcCGCGgaCG-CGgacgccgCCGGGCc -3' miRNA: 3'- -CCCCGCa---GCGCgaGCaGCa------GGCUCGc -5' |
|||||||
29384 | 5' | -61 | NC_006151.1 | + | 113819 | 0.7 | 0.501065 |
Target: 5'- -cGGCcUCGCGCUCGUC-UCCcucGAGCa -3' miRNA: 3'- ccCCGcAGCGCGAGCAGcAGG---CUCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home