miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 59366 0.77 0.209055
Target:  5'- cGGGGCGcCGCGCggcCGUCGUCgCGuccAGCa -3'
miRNA:   3'- -CCCCGCaGCGCGa--GCAGCAG-GC---UCGc -5'
29384 5' -61 NC_006151.1 + 59675 0.68 0.605701
Target:  5'- cGGGGaCG-CGCGCgcaCG-CG-CCGAGCa -3'
miRNA:   3'- -CCCC-GCaGCGCGa--GCaGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 63759 0.72 0.365529
Target:  5'- cGGGGCGUCcucgGCGCccccgCGUCG-CCaGGCGg -3'
miRNA:   3'- -CCCCGCAG----CGCGa----GCAGCaGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 67486 0.66 0.720783
Target:  5'- cGGGcacccgcacacgaGCG-CGCgGCUCG-CGUCCGGGUc -3'
miRNA:   3'- -CCC-------------CGCaGCG-CGAGCaGCAGGCUCGc -5'
29384 5' -61 NC_006151.1 + 69404 0.72 0.388976
Target:  5'- uGGGGCGUgaGCaggaGCUCGUCGcgCCaGGCGg -3'
miRNA:   3'- -CCCCGCAg-CG----CGAGCAGCa-GGcUCGC- -5'
29384 5' -61 NC_006151.1 + 70874 0.66 0.725495
Target:  5'- cGGGCGccuccgccgacgagaUCGCGCgcugCGUCGUgCGcugccuGGCGc -3'
miRNA:   3'- cCCCGC---------------AGCGCGa---GCAGCAgGC------UCGC- -5'
29384 5' -61 NC_006151.1 + 74015 0.69 0.566044
Target:  5'- aGGGGCGUCguGCGCUCGgccauguUCGUcaCCGucuccuGCa -3'
miRNA:   3'- -CCCCGCAG--CGCGAGC-------AGCA--GGCu-----CGc -5'
29384 5' -61 NC_006151.1 + 74154 0.67 0.664144
Target:  5'- gGGGGuCGUcCGUGCccaccuccUCGUcCGUCuCGGGCa -3'
miRNA:   3'- -CCCC-GCA-GCGCG--------AGCA-GCAG-GCUCGc -5'
29384 5' -61 NC_006151.1 + 75214 0.67 0.691221
Target:  5'- aGGGCGUCgggGCGCgCGUCGgccacguaggcgCCGAagGCGc -3'
miRNA:   3'- cCCCGCAG---CGCGaGCAGCa-----------GGCU--CGC- -5'
29384 5' -61 NC_006151.1 + 75397 0.68 0.625182
Target:  5'- cGGGGCGggugCGUGCgCGg-GUCCGGGa- -3'
miRNA:   3'- -CCCCGCa---GCGCGaGCagCAGGCUCgc -5'
29384 5' -61 NC_006151.1 + 75654 0.66 0.712258
Target:  5'- gGGGGC--CG-GCUCGcCG-CCGAGCa -3'
miRNA:   3'- -CCCCGcaGCgCGAGCaGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 76508 0.67 0.672875
Target:  5'- --cGCGUCGaacucgGCaccguagagguugUUGUCGUCCGAGCGg -3'
miRNA:   3'- cccCGCAGCg-----CG-------------AGCAGCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 76817 0.74 0.294628
Target:  5'- aGGGCGggCGCGUaguggCGgcccgCGUCCGGGCGa -3'
miRNA:   3'- cCCCGCa-GCGCGa----GCa----GCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 78730 0.73 0.35718
Target:  5'- uGGGGCG-CGCGCUgCGgcccaCGUCCGccgucugcgccgaGGCGg -3'
miRNA:   3'- -CCCCGCaGCGCGA-GCa----GCAGGC-------------UCGC- -5'
29384 5' -61 NC_006151.1 + 81582 0.68 0.605701
Target:  5'- aGGGUcUCGCGCgCGUCG-CCGGGg- -3'
miRNA:   3'- cCCCGcAGCGCGaGCAGCaGGCUCgc -5'
29384 5' -61 NC_006151.1 + 83174 0.7 0.518665
Target:  5'- cGGGGuCGUCGCGCgggCGgcagagcUCGU-UGAGCGc -3'
miRNA:   3'- -CCCC-GCAGCGCGa--GC-------AGCAgGCUCGC- -5'
29384 5' -61 NC_006151.1 + 83371 0.66 0.720783
Target:  5'- cGGGCG-CGCaggcgccgcagguGCUCGUCcggGUCC-AGCGa -3'
miRNA:   3'- cCCCGCaGCG-------------CGAGCAG---CAGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 84660 0.66 0.740446
Target:  5'- cGGGCG-CGCGcCUCGagG-CCGAGg- -3'
miRNA:   3'- cCCCGCaGCGC-GAGCagCaGGCUCgc -5'
29384 5' -61 NC_006151.1 + 89245 0.67 0.692182
Target:  5'- uGGGCGUCgugucgaGCGC-CGUCGUggucgacggcgCCGcGGCGa -3'
miRNA:   3'- cCCCGCAG-------CGCGaGCAGCA-----------GGC-UCGC- -5'
29384 5' -61 NC_006151.1 + 89663 0.66 0.749681
Target:  5'- aGGuGGCG-CGUGCUCGggCG-CacaaaGAGCGa -3'
miRNA:   3'- -CC-CCGCaGCGCGAGCa-GCaGg----CUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.