miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 28095 0.67 0.693143
Target:  5'- cGGGCGUCcucgagcgggGCGCggcuccUCGUCGgcUCgGGGCGc -3'
miRNA:   3'- cCCCGCAG----------CGCG------AGCAGC--AGgCUCGC- -5'
29384 5' -61 NC_006151.1 + 57746 0.67 0.693143
Target:  5'- cGGcGCGcCGCagccGCUCGUgGcCCGGGCa -3'
miRNA:   3'- cCC-CGCaGCG----CGAGCAgCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 33301 0.67 0.693143
Target:  5'- cGGGGCG-CGCGCgCGUgGgaCCGGGa- -3'
miRNA:   3'- -CCCCGCaGCGCGaGCAgCa-GGCUCgc -5'
29384 5' -61 NC_006151.1 + 89245 0.67 0.692182
Target:  5'- uGGGCGUCgugucgaGCGC-CGUCGUggucgacggcgCCGcGGCGa -3'
miRNA:   3'- cCCCGCAG-------CGCGaGCAGCA-----------GGC-UCGC- -5'
29384 5' -61 NC_006151.1 + 75214 0.67 0.691221
Target:  5'- aGGGCGUCgggGCGCgCGUCGgccacguaggcgCCGAagGCGc -3'
miRNA:   3'- cCCCGCAG---CGCGaGCAGCa-----------GGCU--CGC- -5'
29384 5' -61 NC_006151.1 + 667 0.67 0.683513
Target:  5'- cGGGGCGggcucCGCGgaUCGcaUCGgcgcgCCGAGCc -3'
miRNA:   3'- -CCCCGCa----GCGCg-AGC--AGCa----GGCUCGc -5'
29384 5' -61 NC_006151.1 + 133313 0.67 0.683513
Target:  5'- gGGGGCGgccCGUG-UCGaggCGcgCCGGGCGg -3'
miRNA:   3'- -CCCCGCa--GCGCgAGCa--GCa-GGCUCGC- -5'
29384 5' -61 NC_006151.1 + 130950 0.67 0.683513
Target:  5'- cGGGGgGUCGCGCgggCG-CGggggCCG-GUa -3'
miRNA:   3'- -CCCCgCAGCGCGa--GCaGCa---GGCuCGc -5'
29384 5' -61 NC_006151.1 + 59675 0.68 0.605701
Target:  5'- cGGGGaCG-CGCGCgcaCG-CG-CCGAGCa -3'
miRNA:   3'- -CCCC-GCaGCGCGa--GCaGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 24477 0.68 0.605701
Target:  5'- gGGGGCGUUG-GuCUCGaUgGUCCcGGCGa -3'
miRNA:   3'- -CCCCGCAGCgC-GAGC-AgCAGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 81582 0.68 0.605701
Target:  5'- aGGGUcUCGCGCgCGUCG-CCGGGg- -3'
miRNA:   3'- cCCCGcAGCGCGaGCAGCaGGCUCgc -5'
29384 5' -61 NC_006151.1 + 3455 0.68 0.605701
Target:  5'- cGGGcGCGggGUGCUCGggcaUGggcCCGAGCGg -3'
miRNA:   3'- -CCC-CGCagCGCGAGCa---GCa--GGCUCGC- -5'
29384 5' -61 NC_006151.1 + 136431 0.68 0.595985
Target:  5'- cGGcGGCGcacgccgCGCGCUaCGUCGa-CGAGCGc -3'
miRNA:   3'- -CC-CCGCa------GCGCGA-GCAGCagGCUCGC- -5'
29384 5' -61 NC_006151.1 + 135804 0.68 0.605701
Target:  5'- cGGGCGagCGCGC-CGagG-CCGAGCu -3'
miRNA:   3'- cCCCGCa-GCGCGaGCagCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 141754 0.68 0.609593
Target:  5'- cGGGGCG-CGCGCcccgguggCGUCG-CCGGuucugucccggggacGCGg -3'
miRNA:   3'- -CCCCGCaGCGCGa-------GCAGCaGGCU---------------CGC- -5'
29384 5' -61 NC_006151.1 + 95639 0.68 0.615436
Target:  5'- aGGuGCGagGCGCg-GUCGUCaaaGAGCGu -3'
miRNA:   3'- cCC-CGCagCGCGagCAGCAGg--CUCGC- -5'
29384 5' -61 NC_006151.1 + 102692 0.68 0.615436
Target:  5'- gGGGGCGcccggCGCGggCGgcgCGgCCGAGCc -3'
miRNA:   3'- -CCCCGCa----GCGCgaGCa--GCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 51124 0.68 0.615436
Target:  5'- cGGGCcUCGCGCagGgCGUCCcgGAGCa -3'
miRNA:   3'- cCCCGcAGCGCGagCaGCAGG--CUCGc -5'
29384 5' -61 NC_006151.1 + 75397 0.68 0.625182
Target:  5'- cGGGGCGggugCGUGCgCGg-GUCCGGGa- -3'
miRNA:   3'- -CCCCGCa---GCGCGaGCagCAGGCUCgc -5'
29384 5' -61 NC_006151.1 + 130901 0.68 0.595985
Target:  5'- cGGcGGcCGUCGCcgUCGUCGguggCCGGGCc -3'
miRNA:   3'- -CC-CC-GCAGCGcgAGCAGCa---GGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.