miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 5623 0.66 0.740446
Target:  5'- gGGGGCG-C-CGC-CGcCG-CCGGGCGc -3'
miRNA:   3'- -CCCCGCaGcGCGaGCaGCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 2918 0.66 0.740446
Target:  5'- -cGGCGcCGCGC-CG-CG-CCGAGCc -3'
miRNA:   3'- ccCCGCaGCGCGaGCaGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 111454 0.66 0.740446
Target:  5'- aGGaGGCGcUGCGUcugcgaggCGUCGUCgGGGCc -3'
miRNA:   3'- -CC-CCGCaGCGCGa-------GCAGCAGgCUCGc -5'
29384 5' -61 NC_006151.1 + 55891 0.66 0.740446
Target:  5'- -cGGCGgacgUGCGC-CGggCGaCCGAGCGg -3'
miRNA:   3'- ccCCGCa---GCGCGaGCa-GCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 43382 0.66 0.740446
Target:  5'- gGGGGCGgugguggcCGuCGCUCGUgG-CCG-GCa -3'
miRNA:   3'- -CCCCGCa-------GC-GCGAGCAgCaGGCuCGc -5'
29384 5' -61 NC_006151.1 + 139217 0.66 0.739518
Target:  5'- uGGcGGCGacgcugccgcacaUCGCGCgCGUC-UCCGGcGCGa -3'
miRNA:   3'- -CC-CCGC-------------AGCGCGaGCAGcAGGCU-CGC- -5'
29384 5' -61 NC_006151.1 + 117197 0.66 0.737658
Target:  5'- gGGGGCGUCguaguaguagacggGCGCggCGUCGa-CGAcGCGc -3'
miRNA:   3'- -CCCCGCAG--------------CGCGa-GCAGCagGCU-CGC- -5'
29384 5' -61 NC_006151.1 + 115569 0.66 0.731125
Target:  5'- cGGGCGggCGCGCgggcagGUCGcgCuCGAGCa -3'
miRNA:   3'- cCCCGCa-GCGCGag----CAGCa-G-GCUCGc -5'
29384 5' -61 NC_006151.1 + 70874 0.66 0.725495
Target:  5'- cGGGCGccuccgccgacgagaUCGCGCgcugCGUCGUgCGcugccuGGCGc -3'
miRNA:   3'- cCCCGC---------------AGCGCGa---GCAGCAgGC------UCGC- -5'
29384 5' -61 NC_006151.1 + 84660 0.66 0.740446
Target:  5'- cGGGCG-CGCGcCUCGagG-CCGAGg- -3'
miRNA:   3'- cCCCGCaGCGC-GAGCagCaGGCUCgc -5'
29384 5' -61 NC_006151.1 + 33301 0.67 0.693143
Target:  5'- cGGGGCG-CGCGCgCGUgGgaCCGGGa- -3'
miRNA:   3'- -CCCCGCaGCGCGaGCAgCa-GGCUCgc -5'
29384 5' -61 NC_006151.1 + 18441 0.67 0.673844
Target:  5'- cGGGCGUCGCccgccucCUCGUCGUCguCGucGCc -3'
miRNA:   3'- cCCCGCAGCGc------GAGCAGCAG--GCu-CGc -5'
29384 5' -61 NC_006151.1 + 121421 0.67 0.683513
Target:  5'- cGGGGaCGUCGCgggGCUCG-CG-CCG-GCc -3'
miRNA:   3'- -CCCC-GCAGCG---CGAGCaGCaGGCuCGc -5'
29384 5' -61 NC_006151.1 + 130950 0.67 0.683513
Target:  5'- cGGGGgGUCGCGCgggCG-CGggggCCG-GUa -3'
miRNA:   3'- -CCCCgCAGCGCGa--GCaGCa---GGCuCGc -5'
29384 5' -61 NC_006151.1 + 133313 0.67 0.683513
Target:  5'- gGGGGCGgccCGUG-UCGaggCGcgCCGGGCGg -3'
miRNA:   3'- -CCCCGCa--GCGCgAGCa--GCa-GGCUCGC- -5'
29384 5' -61 NC_006151.1 + 667 0.67 0.683513
Target:  5'- cGGGGCGggcucCGCGgaUCGcaUCGgcgcgCCGAGCc -3'
miRNA:   3'- -CCCCGCa----GCGCg-AGC--AGCa----GGCUCGc -5'
29384 5' -61 NC_006151.1 + 75214 0.67 0.691221
Target:  5'- aGGGCGUCgggGCGCgCGUCGgccacguaggcgCCGAagGCGc -3'
miRNA:   3'- cCCCGCAG---CGCGaGCAGCa-----------GGCU--CGC- -5'
29384 5' -61 NC_006151.1 + 89245 0.67 0.692182
Target:  5'- uGGGCGUCgugucgaGCGC-CGUCGUggucgacggcgCCGcGGCGa -3'
miRNA:   3'- cCCCGCAG-------CGCGaGCAGCA-----------GGC-UCGC- -5'
29384 5' -61 NC_006151.1 + 57746 0.67 0.693143
Target:  5'- cGGcGCGcCGCagccGCUCGUgGcCCGGGCa -3'
miRNA:   3'- cCC-CGCaGCG----CGAGCAgCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 28095 0.67 0.693143
Target:  5'- cGGGCGUCcucgagcgggGCGCggcuccUCGUCGgcUCgGGGCGc -3'
miRNA:   3'- cCCCGCAG----------CGCG------AGCAGC--AGgCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.