miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 102444 0.71 0.438721
Target:  5'- cGGGCGcuggaCGCGCUCGa-GUCCGGGgGc -3'
miRNA:   3'- cCCCGCa----GCGCGAGCagCAGGCUCgC- -5'
29384 5' -61 NC_006151.1 + 57236 0.71 0.447361
Target:  5'- aGGcGGCG-CGCGCggccUCGgCGUCCGcGCGg -3'
miRNA:   3'- -CC-CCGCaGCGCG----AGCaGCAGGCuCGC- -5'
29384 5' -61 NC_006151.1 + 112217 0.71 0.456094
Target:  5'- uGGGcGCaGUCGCGCUCGcUCGUcgCCGccgccaGGCGc -3'
miRNA:   3'- -CCC-CG-CAGCGCGAGC-AGCA--GGC------UCGC- -5'
29384 5' -61 NC_006151.1 + 26350 0.71 0.456094
Target:  5'- cGGGGCGgcggCGgGC-CG-CGUCgGGGCGc -3'
miRNA:   3'- -CCCCGCa---GCgCGaGCaGCAGgCUCGC- -5'
29384 5' -61 NC_006151.1 + 107090 0.71 0.456094
Target:  5'- uGGcGGUGUCGCGCgugcucugggCGcCGcCCGAGCc -3'
miRNA:   3'- -CC-CCGCAGCGCGa---------GCaGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 19127 0.7 0.473831
Target:  5'- gGGGGCG-CGCGCgCGUaguaccaGUCC-AGCGu -3'
miRNA:   3'- -CCCCGCaGCGCGaGCAg------CAGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 90137 0.7 0.482829
Target:  5'- cGGGGCGguaGUGCgCGUCGggcCCGcuGGCGa -3'
miRNA:   3'- -CCCCGCag-CGCGaGCAGCa--GGC--UCGC- -5'
29384 5' -61 NC_006151.1 + 113819 0.7 0.501065
Target:  5'- -cGGCcUCGCGCUCGUC-UCCcucGAGCa -3'
miRNA:   3'- ccCCGcAGCGCGAGCAGcAGG---CUCGc -5'
29384 5' -61 NC_006151.1 + 50465 0.7 0.510297
Target:  5'- cGGGCGcUCGCGCcagcgCGgcgCGaCCGAGCc -3'
miRNA:   3'- cCCCGC-AGCGCGa----GCa--GCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 83174 0.7 0.518665
Target:  5'- cGGGGuCGUCGCGCgggCGgcagagcUCGU-UGAGCGc -3'
miRNA:   3'- -CCCC-GCAGCGCGa--GC-------AGCAgGCUCGC- -5'
29384 5' -61 NC_006151.1 + 96602 0.7 0.519598
Target:  5'- cGGGCGcgggCGCGCcgaCGUCGUgcCCGAGgGc -3'
miRNA:   3'- cCCCGCa---GCGCGa--GCAGCA--GGCUCgC- -5'
29384 5' -61 NC_006151.1 + 16883 0.69 0.538395
Target:  5'- cGGGGC---GCGCUCG-CGUCCGuugccGCGc -3'
miRNA:   3'- -CCCCGcagCGCGAGCaGCAGGCu----CGC- -5'
29384 5' -61 NC_006151.1 + 2055 0.69 0.547881
Target:  5'- -cGGCGUCcucgGCcucCUCGUCGUCCGAGaUGg -3'
miRNA:   3'- ccCCGCAG----CGc--GAGCAGCAGGCUC-GC- -5'
29384 5' -61 NC_006151.1 + 132608 0.69 0.557419
Target:  5'- cGGGCacccccagGUCGaCGCUCG-CGUCCGccgucGGCGc -3'
miRNA:   3'- cCCCG--------CAGC-GCGAGCaGCAGGC-----UCGC- -5'
29384 5' -61 NC_006151.1 + 14641 0.69 0.557419
Target:  5'- cGGGGCGgcCGgGCUCGg-GUCCGguuccgggucGGCGu -3'
miRNA:   3'- -CCCCGCa-GCgCGAGCagCAGGC----------UCGC- -5'
29384 5' -61 NC_006151.1 + 74015 0.69 0.566044
Target:  5'- aGGGGCGUCguGCGCUCGgccauguUCGUcaCCGucuccuGCa -3'
miRNA:   3'- -CCCCGCAG--CGCGAGC-------AGCA--GGCu-----CGc -5'
29384 5' -61 NC_006151.1 + 122018 0.69 0.567004
Target:  5'- --cGCGUCGCGCUCGacaCGUacggCGGGCGc -3'
miRNA:   3'- cccCGCAGCGCGAGCa--GCAg---GCUCGC- -5'
29384 5' -61 NC_006151.1 + 139587 0.69 0.574702
Target:  5'- uGGGC-UCGCGCccccccgagcggCGgccCGUCCGGGCGc -3'
miRNA:   3'- cCCCGcAGCGCGa-----------GCa--GCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 14391 0.69 0.57663
Target:  5'- cGGGgGUCGCGCgucCGUCGcCUaGGUGa -3'
miRNA:   3'- cCCCgCAGCGCGa--GCAGCaGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 17830 0.69 0.57663
Target:  5'- cGGGGCGggCGgccaccaccCGCUCGcuacaCGUgCCGGGCGa -3'
miRNA:   3'- -CCCCGCa-GC---------GCGAGCa----GCA-GGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.