miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 83371 0.66 0.720783
Target:  5'- cGGGCG-CGCaggcgccgcagguGCUCGUCcggGUCC-AGCGa -3'
miRNA:   3'- cCCCGCaGCG-------------CGAGCAG---CAGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 135018 0.66 0.712258
Target:  5'- cGGGGgGgcaGCaGCggggccgCGUCGUCCucgGGGCGg -3'
miRNA:   3'- -CCCCgCag-CG-CGa------GCAGCAGG---CUCGC- -5'
29384 5' -61 NC_006151.1 + 75654 0.66 0.712258
Target:  5'- gGGGGC--CG-GCUCGcCG-CCGAGCa -3'
miRNA:   3'- -CCCCGcaGCgCGAGCaGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 33122 0.66 0.712258
Target:  5'- uGGGCG-CGUGC-CG-CGggCCGAGUGu -3'
miRNA:   3'- cCCCGCaGCGCGaGCaGCa-GGCUCGC- -5'
29384 5' -61 NC_006151.1 + 26871 0.66 0.712258
Target:  5'- -cGGCGUCGUcCUCGUCGacgucgcacuccUCCccaaaGAGCGg -3'
miRNA:   3'- ccCCGCAGCGcGAGCAGC------------AGG-----CUCGC- -5'
29384 5' -61 NC_006151.1 + 27097 0.66 0.702727
Target:  5'- aGGGCG-CGCGUgucgcccgucaCGUCGgcggCCGAGaCGg -3'
miRNA:   3'- cCCCGCaGCGCGa----------GCAGCa---GGCUC-GC- -5'
29384 5' -61 NC_006151.1 + 94982 0.66 0.702727
Target:  5'- cGGaGCGagaCGCGCUCGUaggCGUCaaaGGGCa -3'
miRNA:   3'- cCC-CGCa--GCGCGAGCA---GCAGg--CUCGc -5'
29384 5' -61 NC_006151.1 + 130784 0.66 0.702727
Target:  5'- cGGGCauGUCGCGCguccagcuggCGUacgcggCGUCCGGGUc -3'
miRNA:   3'- cCCCG--CAGCGCGa---------GCA------GCAGGCUCGc -5'
29384 5' -61 NC_006151.1 + 130681 0.66 0.702727
Target:  5'- cGGGGCG-CgGCGCagGaUGUCCGGGgGc -3'
miRNA:   3'- -CCCCGCaG-CGCGagCaGCAGGCUCgC- -5'
29384 5' -61 NC_006151.1 + 136998 0.66 0.702727
Target:  5'- cGGGCG-CGCGCgcaCGgCG-CUGGGCGc -3'
miRNA:   3'- cCCCGCaGCGCGa--GCaGCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 33301 0.67 0.693143
Target:  5'- cGGGGCG-CGCGCgCGUgGgaCCGGGa- -3'
miRNA:   3'- -CCCCGCaGCGCGaGCAgCa-GGCUCgc -5'
29384 5' -61 NC_006151.1 + 57746 0.67 0.693143
Target:  5'- cGGcGCGcCGCagccGCUCGUgGcCCGGGCa -3'
miRNA:   3'- cCC-CGCaGCG----CGAGCAgCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 28095 0.67 0.693143
Target:  5'- cGGGCGUCcucgagcgggGCGCggcuccUCGUCGgcUCgGGGCGc -3'
miRNA:   3'- cCCCGCAG----------CGCG------AGCAGC--AGgCUCGC- -5'
29384 5' -61 NC_006151.1 + 89245 0.67 0.692182
Target:  5'- uGGGCGUCgugucgaGCGC-CGUCGUggucgacggcgCCGcGGCGa -3'
miRNA:   3'- cCCCGCAG-------CGCGaGCAGCA-----------GGC-UCGC- -5'
29384 5' -61 NC_006151.1 + 75214 0.67 0.691221
Target:  5'- aGGGCGUCgggGCGCgCGUCGgccacguaggcgCCGAagGCGc -3'
miRNA:   3'- cCCCGCAG---CGCGaGCAGCa-----------GGCU--CGC- -5'
29384 5' -61 NC_006151.1 + 667 0.67 0.683513
Target:  5'- cGGGGCGggcucCGCGgaUCGcaUCGgcgcgCCGAGCc -3'
miRNA:   3'- -CCCCGCa----GCGCg-AGC--AGCa----GGCUCGc -5'
29384 5' -61 NC_006151.1 + 133313 0.67 0.683513
Target:  5'- gGGGGCGgccCGUG-UCGaggCGcgCCGGGCGg -3'
miRNA:   3'- -CCCCGCa--GCGCgAGCa--GCa-GGCUCGC- -5'
29384 5' -61 NC_006151.1 + 130950 0.67 0.683513
Target:  5'- cGGGGgGUCGCGCgggCG-CGggggCCG-GUa -3'
miRNA:   3'- -CCCCgCAGCGCGa--GCaGCa---GGCuCGc -5'
29384 5' -61 NC_006151.1 + 121421 0.67 0.683513
Target:  5'- cGGGGaCGUCGCgggGCUCG-CG-CCG-GCc -3'
miRNA:   3'- -CCCC-GCAGCG---CGAGCaGCaGGCuCGc -5'
29384 5' -61 NC_006151.1 + 17093 0.67 0.673844
Target:  5'- -aGGCG-CGCGCcCGUCGgggcgCCGGGgGc -3'
miRNA:   3'- ccCCGCaGCGCGaGCAGCa----GGCUCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.