Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29384 | 5' | -61 | NC_006151.1 | + | 26871 | 0.66 | 0.712258 |
Target: 5'- -cGGCGUCGUcCUCGUCGacgucgcacuccUCCccaaaGAGCGg -3' miRNA: 3'- ccCCGCAGCGcGAGCAGC------------AGG-----CUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 27097 | 0.66 | 0.702727 |
Target: 5'- aGGGCG-CGCGUgucgcccgucaCGUCGgcggCCGAGaCGg -3' miRNA: 3'- cCCCGCaGCGCGa----------GCAGCa---GGCUC-GC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 28095 | 0.67 | 0.693143 |
Target: 5'- cGGGCGUCcucgagcgggGCGCggcuccUCGUCGgcUCgGGGCGc -3' miRNA: 3'- cCCCGCAG----------CGCG------AGCAGC--AGgCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 28178 | 0.73 | 0.335816 |
Target: 5'- uGGGGCGgcgaGUGC-CGUCGgCCGGGCc -3' miRNA: 3'- -CCCCGCag--CGCGaGCAGCaGGCUCGc -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 31586 | 0.71 | 0.421732 |
Target: 5'- gGGGGCGgCGCGCUCcgcgcucccccGcCGcCUGGGCGg -3' miRNA: 3'- -CCCCGCaGCGCGAG-----------CaGCaGGCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 33122 | 0.66 | 0.712258 |
Target: 5'- uGGGCG-CGUGC-CG-CGggCCGAGUGu -3' miRNA: 3'- cCCCGCaGCGCGaGCaGCa-GGCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 33301 | 0.67 | 0.693143 |
Target: 5'- cGGGGCG-CGCGCgCGUgGgaCCGGGa- -3' miRNA: 3'- -CCCCGCaGCGCGaGCAgCa-GGCUCgc -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 33902 | 0.74 | 0.314713 |
Target: 5'- gGGGGCcUCGCGCcucCG-CGUCCG-GCGg -3' miRNA: 3'- -CCCCGcAGCGCGa--GCaGCAGGCuCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 34476 | 0.68 | 0.595985 |
Target: 5'- cGGGCGggucCGgGCUCGagGUUCGGGUc -3' miRNA: 3'- cCCCGCa---GCgCGAGCagCAGGCUCGc -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 43382 | 0.66 | 0.740446 |
Target: 5'- gGGGGCGgugguggcCGuCGCUCGUgG-CCG-GCa -3' miRNA: 3'- -CCCCGCa-------GC-GCGAGCAgCaGGCuCGc -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 44175 | 0.67 | 0.644681 |
Target: 5'- uGGGaGCacCGCgGgUCGcCGUCCGGGCGg -3' miRNA: 3'- -CCC-CGcaGCG-CgAGCaGCAGGCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 49252 | 0.75 | 0.269422 |
Target: 5'- uGGGcGCGgcucgugCGCGC-CGUCGUCC-AGCGg -3' miRNA: 3'- -CCC-CGCa------GCGCGaGCAGCAGGcUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 50465 | 0.7 | 0.510297 |
Target: 5'- cGGGCGcUCGCGCcagcgCGgcgCGaCCGAGCc -3' miRNA: 3'- cCCCGC-AGCGCGa----GCa--GCaGGCUCGc -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 51124 | 0.68 | 0.615436 |
Target: 5'- cGGGCcUCGCGCagGgCGUCCcgGAGCa -3' miRNA: 3'- cCCCGcAGCGCGagCaGCAGG--CUCGc -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 53344 | 0.68 | 0.582424 |
Target: 5'- cGGGGCG-CGCGCgcgccgcguacugCGUCGUgUCGuacGCGg -3' miRNA: 3'- -CCCCGCaGCGCGa------------GCAGCA-GGCu--CGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 55891 | 0.66 | 0.740446 |
Target: 5'- -cGGCGgacgUGCGC-CGggCGaCCGAGCGg -3' miRNA: 3'- ccCCGCa---GCGCGaGCa-GCaGGCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 56940 | 0.72 | 0.381052 |
Target: 5'- cGGGGCGUCgccgGCGCUCaG-CGcCuCGAGCGc -3' miRNA: 3'- -CCCCGCAG----CGCGAG-CaGCaG-GCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 57236 | 0.71 | 0.447361 |
Target: 5'- aGGcGGCG-CGCGCggccUCGgCGUCCGcGCGg -3' miRNA: 3'- -CC-CCGCaGCGCG----AGCaGCAGGCuCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 57537 | 0.66 | 0.721727 |
Target: 5'- cGGcGCGgccgCGgGCaCGUCG-CCGAGCa -3' miRNA: 3'- cCC-CGCa---GCgCGaGCAGCaGGCUCGc -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 57746 | 0.67 | 0.693143 |
Target: 5'- cGGcGCGcCGCagccGCUCGUgGcCCGGGCa -3' miRNA: 3'- cCC-CGCaGCG----CGAGCAgCaGGCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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