miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 26871 0.66 0.712258
Target:  5'- -cGGCGUCGUcCUCGUCGacgucgcacuccUCCccaaaGAGCGg -3'
miRNA:   3'- ccCCGCAGCGcGAGCAGC------------AGG-----CUCGC- -5'
29384 5' -61 NC_006151.1 + 27097 0.66 0.702727
Target:  5'- aGGGCG-CGCGUgucgcccgucaCGUCGgcggCCGAGaCGg -3'
miRNA:   3'- cCCCGCaGCGCGa----------GCAGCa---GGCUC-GC- -5'
29384 5' -61 NC_006151.1 + 28095 0.67 0.693143
Target:  5'- cGGGCGUCcucgagcgggGCGCggcuccUCGUCGgcUCgGGGCGc -3'
miRNA:   3'- cCCCGCAG----------CGCG------AGCAGC--AGgCUCGC- -5'
29384 5' -61 NC_006151.1 + 28178 0.73 0.335816
Target:  5'- uGGGGCGgcgaGUGC-CGUCGgCCGGGCc -3'
miRNA:   3'- -CCCCGCag--CGCGaGCAGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 31586 0.71 0.421732
Target:  5'- gGGGGCGgCGCGCUCcgcgcucccccGcCGcCUGGGCGg -3'
miRNA:   3'- -CCCCGCaGCGCGAG-----------CaGCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 33122 0.66 0.712258
Target:  5'- uGGGCG-CGUGC-CG-CGggCCGAGUGu -3'
miRNA:   3'- cCCCGCaGCGCGaGCaGCa-GGCUCGC- -5'
29384 5' -61 NC_006151.1 + 33301 0.67 0.693143
Target:  5'- cGGGGCG-CGCGCgCGUgGgaCCGGGa- -3'
miRNA:   3'- -CCCCGCaGCGCGaGCAgCa-GGCUCgc -5'
29384 5' -61 NC_006151.1 + 33902 0.74 0.314713
Target:  5'- gGGGGCcUCGCGCcucCG-CGUCCG-GCGg -3'
miRNA:   3'- -CCCCGcAGCGCGa--GCaGCAGGCuCGC- -5'
29384 5' -61 NC_006151.1 + 34476 0.68 0.595985
Target:  5'- cGGGCGggucCGgGCUCGagGUUCGGGUc -3'
miRNA:   3'- cCCCGCa---GCgCGAGCagCAGGCUCGc -5'
29384 5' -61 NC_006151.1 + 43382 0.66 0.740446
Target:  5'- gGGGGCGgugguggcCGuCGCUCGUgG-CCG-GCa -3'
miRNA:   3'- -CCCCGCa-------GC-GCGAGCAgCaGGCuCGc -5'
29384 5' -61 NC_006151.1 + 44175 0.67 0.644681
Target:  5'- uGGGaGCacCGCgGgUCGcCGUCCGGGCGg -3'
miRNA:   3'- -CCC-CGcaGCG-CgAGCaGCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 49252 0.75 0.269422
Target:  5'- uGGGcGCGgcucgugCGCGC-CGUCGUCC-AGCGg -3'
miRNA:   3'- -CCC-CGCa------GCGCGaGCAGCAGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 50465 0.7 0.510297
Target:  5'- cGGGCGcUCGCGCcagcgCGgcgCGaCCGAGCc -3'
miRNA:   3'- cCCCGC-AGCGCGa----GCa--GCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 51124 0.68 0.615436
Target:  5'- cGGGCcUCGCGCagGgCGUCCcgGAGCa -3'
miRNA:   3'- cCCCGcAGCGCGagCaGCAGG--CUCGc -5'
29384 5' -61 NC_006151.1 + 53344 0.68 0.582424
Target:  5'- cGGGGCG-CGCGCgcgccgcguacugCGUCGUgUCGuacGCGg -3'
miRNA:   3'- -CCCCGCaGCGCGa------------GCAGCA-GGCu--CGC- -5'
29384 5' -61 NC_006151.1 + 55891 0.66 0.740446
Target:  5'- -cGGCGgacgUGCGC-CGggCGaCCGAGCGg -3'
miRNA:   3'- ccCCGCa---GCGCGaGCa-GCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 56940 0.72 0.381052
Target:  5'- cGGGGCGUCgccgGCGCUCaG-CGcCuCGAGCGc -3'
miRNA:   3'- -CCCCGCAG----CGCGAG-CaGCaG-GCUCGC- -5'
29384 5' -61 NC_006151.1 + 57236 0.71 0.447361
Target:  5'- aGGcGGCG-CGCGCggccUCGgCGUCCGcGCGg -3'
miRNA:   3'- -CC-CCGCaGCGCG----AGCaGCAGGCuCGC- -5'
29384 5' -61 NC_006151.1 + 57537 0.66 0.721727
Target:  5'- cGGcGCGgccgCGgGCaCGUCG-CCGAGCa -3'
miRNA:   3'- cCC-CGCa---GCgCGaGCAGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 57746 0.67 0.693143
Target:  5'- cGGcGCGcCGCagccGCUCGUgGcCCGGGCa -3'
miRNA:   3'- cCC-CGCaGCG----CGAGCAgCaGGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.