miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 117197 0.66 0.737658
Target:  5'- gGGGGCGUCguaguaguagacggGCGCggCGUCGa-CGAcGCGc -3'
miRNA:   3'- -CCCCGCAG--------------CGCGa-GCAGCagGCU-CGC- -5'
29384 5' -61 NC_006151.1 + 115569 0.66 0.731125
Target:  5'- cGGGCGggCGCGCgggcagGUCGcgCuCGAGCa -3'
miRNA:   3'- cCCCGCa-GCGCGag----CAGCa-G-GCUCGc -5'
29384 5' -61 NC_006151.1 + 115209 0.66 0.721727
Target:  5'- cGGGCG-CGCGCgCGaUCGUggccgcugccgCCGAGaCGg -3'
miRNA:   3'- cCCCGCaGCGCGaGC-AGCA-----------GGCUC-GC- -5'
29384 5' -61 NC_006151.1 + 114927 0.73 0.328669
Target:  5'- -cGGCGUCGCGCUCGgCcUCCGGGg- -3'
miRNA:   3'- ccCCGCAGCGCGAGCaGcAGGCUCgc -5'
29384 5' -61 NC_006151.1 + 113819 0.7 0.501065
Target:  5'- -cGGCcUCGCGCUCGUC-UCCcucGAGCa -3'
miRNA:   3'- ccCCGcAGCGCGAGCAGcAGG---CUCGc -5'
29384 5' -61 NC_006151.1 + 113107 0.66 0.749681
Target:  5'- gGGGGCGgggcCGCGgaCG-CGgacgccgCCGGGCc -3'
miRNA:   3'- -CCCCGCa---GCGCgaGCaGCa------GGCUCGc -5'
29384 5' -61 NC_006151.1 + 112217 0.71 0.456094
Target:  5'- uGGGcGCaGUCGCGCUCGcUCGUcgCCGccgccaGGCGc -3'
miRNA:   3'- -CCC-CG-CAGCGCGAGC-AGCA--GGC------UCGC- -5'
29384 5' -61 NC_006151.1 + 111939 0.68 0.595985
Target:  5'- aGGGUgccgcucaugGUCGUcgUCGUCGUCgCGAGCGu -3'
miRNA:   3'- cCCCG----------CAGCGcgAGCAGCAG-GCUCGC- -5'
29384 5' -61 NC_006151.1 + 111454 0.66 0.740446
Target:  5'- aGGaGGCGcUGCGUcugcgaggCGUCGUCgGGGCc -3'
miRNA:   3'- -CC-CCGCaGCGCGa-------GCAGCAGgCUCGc -5'
29384 5' -61 NC_006151.1 + 109548 0.67 0.65442
Target:  5'- cGGaGGCGcCGUGgaCGUgGcCCGAGCc -3'
miRNA:   3'- -CC-CCGCaGCGCgaGCAgCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 107090 0.71 0.456094
Target:  5'- uGGcGGUGUCGCGCgugcucugggCGcCGcCCGAGCc -3'
miRNA:   3'- -CC-CCGCAGCGCGa---------GCaGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 102692 0.68 0.615436
Target:  5'- gGGGGCGcccggCGCGggCGgcgCGgCCGAGCc -3'
miRNA:   3'- -CCCCGCa----GCGCgaGCa--GCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 102444 0.71 0.438721
Target:  5'- cGGGCGcuggaCGCGCUCGa-GUCCGGGgGc -3'
miRNA:   3'- cCCCGCa----GCGCGAGCagCAGGCUCgC- -5'
29384 5' -61 NC_006151.1 + 98656 0.66 0.749681
Target:  5'- cGGGCG-CGCGCUCcgccgacgaCGUCCuGGCc -3'
miRNA:   3'- cCCCGCaGCGCGAGca-------GCAGGcUCGc -5'
29384 5' -61 NC_006151.1 + 97847 0.66 0.730189
Target:  5'- --uGCG-CGCGCagcgCGUCGUCCGcguucucGGCGg -3'
miRNA:   3'- cccCGCaGCGCGa---GCAGCAGGC-------UCGC- -5'
29384 5' -61 NC_006151.1 + 97385 0.71 0.430177
Target:  5'- gGGGGCGUCG-GC-C-UCGUCCGuGCc -3'
miRNA:   3'- -CCCCGCAGCgCGaGcAGCAGGCuCGc -5'
29384 5' -61 NC_006151.1 + 96602 0.7 0.519598
Target:  5'- cGGGCGcgggCGCGCcgaCGUCGUgcCCGAGgGc -3'
miRNA:   3'- cCCCGCa---GCGCGa--GCAGCA--GGCUCgC- -5'
29384 5' -61 NC_006151.1 + 95639 0.68 0.615436
Target:  5'- aGGuGCGagGCGCg-GUCGUCaaaGAGCGu -3'
miRNA:   3'- cCC-CGCagCGCGagCAGCAGg--CUCGC- -5'
29384 5' -61 NC_006151.1 + 95445 0.66 0.749681
Target:  5'- gGGcGGCGcCGCGCg---UGUCCGuGUGg -3'
miRNA:   3'- -CC-CCGCaGCGCGagcaGCAGGCuCGC- -5'
29384 5' -61 NC_006151.1 + 94982 0.66 0.702727
Target:  5'- cGGaGCGagaCGCGCUCGUaggCGUCaaaGGGCa -3'
miRNA:   3'- cCC-CGCa--GCGCGAGCA---GCAGg--CUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.