miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 141754 0.68 0.609593
Target:  5'- cGGGGCG-CGCGCcccgguggCGUCG-CCGGuucugucccggggacGCGg -3'
miRNA:   3'- -CCCCGCaGCGCGa-------GCAGCaGGCU---------------CGC- -5'
29384 5' -61 NC_006151.1 + 139587 0.69 0.574702
Target:  5'- uGGGC-UCGCGCccccccgagcggCGgccCGUCCGGGCGc -3'
miRNA:   3'- cCCCGcAGCGCGa-----------GCa--GCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 139217 0.66 0.739518
Target:  5'- uGGcGGCGacgcugccgcacaUCGCGCgCGUC-UCCGGcGCGa -3'
miRNA:   3'- -CC-CCGC-------------AGCGCGaGCAGcAGGCU-CGC- -5'
29384 5' -61 NC_006151.1 + 136998 0.66 0.702727
Target:  5'- cGGGCG-CGCGCgcaCGgCG-CUGGGCGc -3'
miRNA:   3'- cCCCGCaGCGCGa--GCaGCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 136431 0.68 0.595985
Target:  5'- cGGcGGCGcacgccgCGCGCUaCGUCGa-CGAGCGc -3'
miRNA:   3'- -CC-CCGCa------GCGCGA-GCAGCagGCUCGC- -5'
29384 5' -61 NC_006151.1 + 135804 0.68 0.605701
Target:  5'- cGGGCGagCGCGC-CGagG-CCGAGCu -3'
miRNA:   3'- cCCCGCa-GCGCGaGCagCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 135018 0.66 0.712258
Target:  5'- cGGGGgGgcaGCaGCggggccgCGUCGUCCucgGGGCGg -3'
miRNA:   3'- -CCCCgCag-CG-CGa------GCAGCAGG---CUCGC- -5'
29384 5' -61 NC_006151.1 + 133313 0.67 0.683513
Target:  5'- gGGGGCGgccCGUG-UCGaggCGcgCCGGGCGg -3'
miRNA:   3'- -CCCCGCa--GCGCgAGCa--GCa-GGCUCGC- -5'
29384 5' -61 NC_006151.1 + 132608 0.69 0.557419
Target:  5'- cGGGCacccccagGUCGaCGCUCG-CGUCCGccgucGGCGc -3'
miRNA:   3'- cCCCG--------CAGC-GCGAGCaGCAGGC-----UCGC- -5'
29384 5' -61 NC_006151.1 + 131444 0.66 0.721727
Target:  5'- cGGGCGgCGgGCggaa-GUCCGGGCGc -3'
miRNA:   3'- cCCCGCaGCgCGagcagCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 130950 0.67 0.683513
Target:  5'- cGGGGgGUCGCGCgggCG-CGggggCCG-GUa -3'
miRNA:   3'- -CCCCgCAGCGCGa--GCaGCa---GGCuCGc -5'
29384 5' -61 NC_006151.1 + 130901 0.68 0.595985
Target:  5'- cGGcGGcCGUCGCcgUCGUCGguggCCGGGCc -3'
miRNA:   3'- -CC-CC-GCAGCGcgAGCAGCa---GGCUCGc -5'
29384 5' -61 NC_006151.1 + 130784 0.66 0.702727
Target:  5'- cGGGCauGUCGCGCguccagcuggCGUacgcggCGUCCGGGUc -3'
miRNA:   3'- cCCCG--CAGCGCGa---------GCA------GCAGGCUCGc -5'
29384 5' -61 NC_006151.1 + 130681 0.66 0.702727
Target:  5'- cGGGGCG-CgGCGCagGaUGUCCGGGgGc -3'
miRNA:   3'- -CCCCGCaG-CGCGagCaGCAGGCUCgC- -5'
29384 5' -61 NC_006151.1 + 128909 1.09 0.001232
Target:  5'- gGGGGCGUCGCGCUCGUCGUCCGAGCGc -3'
miRNA:   3'- -CCCCGCAGCGCGAGCAGCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 127865 0.81 0.10149
Target:  5'- gGGGGCGccgccCGCcgccguccaccuccaGCUCGUCGUCCGAGCu -3'
miRNA:   3'- -CCCCGCa----GCG---------------CGAGCAGCAGGCUCGc -5'
29384 5' -61 NC_006151.1 + 127549 0.67 0.664144
Target:  5'- gGGGGCGUCGUcgUCGUgGccgCCGccGGCGc -3'
miRNA:   3'- -CCCCGCAGCGcgAGCAgCa--GGC--UCGC- -5'
29384 5' -61 NC_006151.1 + 127296 0.67 0.644681
Target:  5'- gGGGGUGcUgGUacagGC-CGUCGUCCGcGCGg -3'
miRNA:   3'- -CCCCGC-AgCG----CGaGCAGCAGGCuCGC- -5'
29384 5' -61 NC_006151.1 + 122018 0.69 0.567004
Target:  5'- --cGCGUCGCGCUCGacaCGUacggCGGGCGc -3'
miRNA:   3'- cccCGCAGCGCGAGCa--GCAg---GCUCGC- -5'
29384 5' -61 NC_006151.1 + 121421 0.67 0.683513
Target:  5'- cGGGGaCGUCGCgggGCUCG-CG-CCG-GCc -3'
miRNA:   3'- -CCCC-GCAGCG---CGAGCaGCaGGCuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.