miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 128909 1.09 0.001232
Target:  5'- gGGGGCGUCGCGCUCGUCGUCCGAGCGc -3'
miRNA:   3'- -CCCCGCAGCGCGAGCAGCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 127865 0.81 0.10149
Target:  5'- gGGGGCGccgccCGCcgccguccaccuccaGCUCGUCGUCCGAGCu -3'
miRNA:   3'- -CCCCGCa----GCG---------------CGAGCAGCAGGCUCGc -5'
29384 5' -61 NC_006151.1 + 22299 0.78 0.164265
Target:  5'- -cGGCGUCcacguccGCGCcgagCGUCGUCCGGGCGa -3'
miRNA:   3'- ccCCGCAG-------CGCGa---GCAGCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 92684 0.78 0.16869
Target:  5'- cGGGGaCG-CGCGCUCGcCGcgcgCCGAGCGc -3'
miRNA:   3'- -CCCC-GCaGCGCGAGCaGCa---GGCUCGC- -5'
29384 5' -61 NC_006151.1 + 59366 0.77 0.209055
Target:  5'- cGGGGCGcCGCGCggcCGUCGUCgCGuccAGCa -3'
miRNA:   3'- -CCCCGCaGCGCGa--GCAGCAG-GC---UCGc -5'
29384 5' -61 NC_006151.1 + 49252 0.75 0.269422
Target:  5'- uGGGcGCGgcucgugCGCGC-CGUCGUCC-AGCGg -3'
miRNA:   3'- -CCC-CGCa------GCGCGaGCAGCAGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 76817 0.74 0.294628
Target:  5'- aGGGCGggCGCGUaguggCGgcccgCGUCCGGGCGa -3'
miRNA:   3'- cCCCGCa-GCGCGa----GCa----GCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 33902 0.74 0.314713
Target:  5'- gGGGGCcUCGCGCcucCG-CGUCCG-GCGg -3'
miRNA:   3'- -CCCCGcAGCGCGa--GCaGCAGGCuCGC- -5'
29384 5' -61 NC_006151.1 + 114927 0.73 0.328669
Target:  5'- -cGGCGUCGCGCUCGgCcUCCGGGg- -3'
miRNA:   3'- ccCCGCAGCGCGAGCaGcAGGCUCgc -5'
29384 5' -61 NC_006151.1 + 28178 0.73 0.335816
Target:  5'- uGGGGCGgcgaGUGC-CGUCGgCCGGGCc -3'
miRNA:   3'- -CCCCGCag--CGCGaGCAGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 78730 0.73 0.35718
Target:  5'- uGGGGCG-CGCGCUgCGgcccaCGUCCGccgucugcgccgaGGCGg -3'
miRNA:   3'- -CCCCGCaGCGCGA-GCa----GCAGGC-------------UCGC- -5'
29384 5' -61 NC_006151.1 + 63759 0.72 0.365529
Target:  5'- cGGGGCGUCcucgGCGCccccgCGUCG-CCaGGCGg -3'
miRNA:   3'- -CCCCGCAG----CGCGa----GCAGCaGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 56940 0.72 0.381052
Target:  5'- cGGGGCGUCgccgGCGCUCaG-CGcCuCGAGCGc -3'
miRNA:   3'- -CCCCGCAG----CGCGAG-CaGCaG-GCUCGC- -5'
29384 5' -61 NC_006151.1 + 23261 0.72 0.381052
Target:  5'- gGGGGCaUCGCcguggacgacCUCGUCGucagacUCCGAGCGg -3'
miRNA:   3'- -CCCCGcAGCGc---------GAGCAGC------AGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 69404 0.72 0.388976
Target:  5'- uGGGGCGUgaGCaggaGCUCGUCGcgCCaGGCGg -3'
miRNA:   3'- -CCCCGCAg-CG----CGAGCAGCa-GGcUCGC- -5'
29384 5' -61 NC_006151.1 + 17325 0.72 0.397008
Target:  5'- gGGGGCGcCGCgucaGCUCGUgCGUCUcGGUGg -3'
miRNA:   3'- -CCCCGCaGCG----CGAGCA-GCAGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 91564 0.72 0.40025
Target:  5'- cGGGGCGauggcggCGCGCgcgugcuccaggugcUCGUCG-CUGAGCa -3'
miRNA:   3'- -CCCCGCa------GCGCG---------------AGCAGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 31586 0.71 0.421732
Target:  5'- gGGGGCGgCGCGCUCcgcgcucccccGcCGcCUGGGCGg -3'
miRNA:   3'- -CCCCGCaGCGCGAG-----------CaGCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 97385 0.71 0.430177
Target:  5'- gGGGGCGUCG-GC-C-UCGUCCGuGCc -3'
miRNA:   3'- -CCCCGCAGCgCGaGcAGCAGGCuCGc -5'
29384 5' -61 NC_006151.1 + 102444 0.71 0.438721
Target:  5'- cGGGCGcuggaCGCGCUCGa-GUCCGGGgGc -3'
miRNA:   3'- cCCCGCa----GCGCGAGCagCAGGCUCgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.