Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29384 | 5' | -61 | NC_006151.1 | + | 667 | 0.67 | 0.683513 |
Target: 5'- cGGGGCGggcucCGCGgaUCGcaUCGgcgcgCCGAGCc -3' miRNA: 3'- -CCCCGCa----GCGCg-AGC--AGCa----GGCUCGc -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 2055 | 0.69 | 0.547881 |
Target: 5'- -cGGCGUCcucgGCcucCUCGUCGUCCGAGaUGg -3' miRNA: 3'- ccCCGCAG----CGc--GAGCAGCAGGCUC-GC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 2918 | 0.66 | 0.740446 |
Target: 5'- -cGGCGcCGCGC-CG-CG-CCGAGCc -3' miRNA: 3'- ccCCGCaGCGCGaGCaGCaGGCUCGc -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 3455 | 0.68 | 0.605701 |
Target: 5'- cGGGcGCGggGUGCUCGggcaUGggcCCGAGCGg -3' miRNA: 3'- -CCC-CGCagCGCGAGCa---GCa--GGCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 4223 | 0.66 | 0.749681 |
Target: 5'- cGGGGCG-CGgGCgggCG-CGggcagCCgGAGCGg -3' miRNA: 3'- -CCCCGCaGCgCGa--GCaGCa----GG-CUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 5623 | 0.66 | 0.740446 |
Target: 5'- gGGGGCG-C-CGC-CGcCG-CCGGGCGc -3' miRNA: 3'- -CCCCGCaGcGCGaGCaGCaGGCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 14391 | 0.69 | 0.57663 |
Target: 5'- cGGGgGUCGCGCgucCGUCGcCUaGGUGa -3' miRNA: 3'- cCCCgCAGCGCGa--GCAGCaGGcUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 14641 | 0.69 | 0.557419 |
Target: 5'- cGGGGCGgcCGgGCUCGg-GUCCGguuccgggucGGCGu -3' miRNA: 3'- -CCCCGCa-GCgCGAGCagCAGGC----------UCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 16883 | 0.69 | 0.538395 |
Target: 5'- cGGGGC---GCGCUCG-CGUCCGuugccGCGc -3' miRNA: 3'- -CCCCGcagCGCGAGCaGCAGGCu----CGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 17054 | 0.71 | 0.438721 |
Target: 5'- aGGGCGUCgGCGUcCGUCaGcCCGGGCc -3' miRNA: 3'- cCCCGCAG-CGCGaGCAG-CaGGCUCGc -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 17093 | 0.67 | 0.673844 |
Target: 5'- -aGGCG-CGCGCcCGUCGgggcgCCGGGgGc -3' miRNA: 3'- ccCCGCaGCGCGaGCAGCa----GGCUCgC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 17325 | 0.72 | 0.397008 |
Target: 5'- gGGGGCGcCGCgucaGCUCGUgCGUCUcGGUGg -3' miRNA: 3'- -CCCCGCaGCG----CGAGCA-GCAGGcUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 17830 | 0.69 | 0.57663 |
Target: 5'- cGGGGCGggCGgccaccaccCGCUCGcuacaCGUgCCGGGCGa -3' miRNA: 3'- -CCCCGCa-GC---------GCGAGCa----GCA-GGCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 18158 | 0.68 | 0.634932 |
Target: 5'- gGGGGCGgcggCGgGCaUGUCGgaaugCGGGCGg -3' miRNA: 3'- -CCCCGCa---GCgCGaGCAGCag---GCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 18441 | 0.67 | 0.673844 |
Target: 5'- cGGGCGUCGCccgccucCUCGUCGUCguCGucGCc -3' miRNA: 3'- cCCCGCAGCGc------GAGCAGCAG--GCu-CGc -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 19127 | 0.7 | 0.473831 |
Target: 5'- gGGGGCG-CGCGCgCGUaguaccaGUCC-AGCGu -3' miRNA: 3'- -CCCCGCaGCGCGaGCAg------CAGGcUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 22299 | 0.78 | 0.164265 |
Target: 5'- -cGGCGUCcacguccGCGCcgagCGUCGUCCGGGCGa -3' miRNA: 3'- ccCCGCAG-------CGCGa---GCAGCAGGCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 23261 | 0.72 | 0.381052 |
Target: 5'- gGGGGCaUCGCcguggacgacCUCGUCGucagacUCCGAGCGg -3' miRNA: 3'- -CCCCGcAGCGc---------GAGCAGC------AGGCUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 24477 | 0.68 | 0.605701 |
Target: 5'- gGGGGCGUUG-GuCUCGaUgGUCCcGGCGa -3' miRNA: 3'- -CCCCGCAGCgC-GAGC-AgCAGGcUCGC- -5' |
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29384 | 5' | -61 | NC_006151.1 | + | 26350 | 0.71 | 0.456094 |
Target: 5'- cGGGGCGgcggCGgGC-CG-CGUCgGGGCGc -3' miRNA: 3'- -CCCCGCa---GCgCGaGCaGCAGgCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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