miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 667 0.67 0.683513
Target:  5'- cGGGGCGggcucCGCGgaUCGcaUCGgcgcgCCGAGCc -3'
miRNA:   3'- -CCCCGCa----GCGCg-AGC--AGCa----GGCUCGc -5'
29384 5' -61 NC_006151.1 + 2055 0.69 0.547881
Target:  5'- -cGGCGUCcucgGCcucCUCGUCGUCCGAGaUGg -3'
miRNA:   3'- ccCCGCAG----CGc--GAGCAGCAGGCUC-GC- -5'
29384 5' -61 NC_006151.1 + 2918 0.66 0.740446
Target:  5'- -cGGCGcCGCGC-CG-CG-CCGAGCc -3'
miRNA:   3'- ccCCGCaGCGCGaGCaGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 3455 0.68 0.605701
Target:  5'- cGGGcGCGggGUGCUCGggcaUGggcCCGAGCGg -3'
miRNA:   3'- -CCC-CGCagCGCGAGCa---GCa--GGCUCGC- -5'
29384 5' -61 NC_006151.1 + 4223 0.66 0.749681
Target:  5'- cGGGGCG-CGgGCgggCG-CGggcagCCgGAGCGg -3'
miRNA:   3'- -CCCCGCaGCgCGa--GCaGCa----GG-CUCGC- -5'
29384 5' -61 NC_006151.1 + 5623 0.66 0.740446
Target:  5'- gGGGGCG-C-CGC-CGcCG-CCGGGCGc -3'
miRNA:   3'- -CCCCGCaGcGCGaGCaGCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 14391 0.69 0.57663
Target:  5'- cGGGgGUCGCGCgucCGUCGcCUaGGUGa -3'
miRNA:   3'- cCCCgCAGCGCGa--GCAGCaGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 14641 0.69 0.557419
Target:  5'- cGGGGCGgcCGgGCUCGg-GUCCGguuccgggucGGCGu -3'
miRNA:   3'- -CCCCGCa-GCgCGAGCagCAGGC----------UCGC- -5'
29384 5' -61 NC_006151.1 + 16883 0.69 0.538395
Target:  5'- cGGGGC---GCGCUCG-CGUCCGuugccGCGc -3'
miRNA:   3'- -CCCCGcagCGCGAGCaGCAGGCu----CGC- -5'
29384 5' -61 NC_006151.1 + 17054 0.71 0.438721
Target:  5'- aGGGCGUCgGCGUcCGUCaGcCCGGGCc -3'
miRNA:   3'- cCCCGCAG-CGCGaGCAG-CaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 17093 0.67 0.673844
Target:  5'- -aGGCG-CGCGCcCGUCGgggcgCCGGGgGc -3'
miRNA:   3'- ccCCGCaGCGCGaGCAGCa----GGCUCgC- -5'
29384 5' -61 NC_006151.1 + 17325 0.72 0.397008
Target:  5'- gGGGGCGcCGCgucaGCUCGUgCGUCUcGGUGg -3'
miRNA:   3'- -CCCCGCaGCG----CGAGCA-GCAGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 17830 0.69 0.57663
Target:  5'- cGGGGCGggCGgccaccaccCGCUCGcuacaCGUgCCGGGCGa -3'
miRNA:   3'- -CCCCGCa-GC---------GCGAGCa----GCA-GGCUCGC- -5'
29384 5' -61 NC_006151.1 + 18158 0.68 0.634932
Target:  5'- gGGGGCGgcggCGgGCaUGUCGgaaugCGGGCGg -3'
miRNA:   3'- -CCCCGCa---GCgCGaGCAGCag---GCUCGC- -5'
29384 5' -61 NC_006151.1 + 18441 0.67 0.673844
Target:  5'- cGGGCGUCGCccgccucCUCGUCGUCguCGucGCc -3'
miRNA:   3'- cCCCGCAGCGc------GAGCAGCAG--GCu-CGc -5'
29384 5' -61 NC_006151.1 + 19127 0.7 0.473831
Target:  5'- gGGGGCG-CGCGCgCGUaguaccaGUCC-AGCGu -3'
miRNA:   3'- -CCCCGCaGCGCGaGCAg------CAGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 22299 0.78 0.164265
Target:  5'- -cGGCGUCcacguccGCGCcgagCGUCGUCCGGGCGa -3'
miRNA:   3'- ccCCGCAG-------CGCGa---GCAGCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 23261 0.72 0.381052
Target:  5'- gGGGGCaUCGCcguggacgacCUCGUCGucagacUCCGAGCGg -3'
miRNA:   3'- -CCCCGcAGCGc---------GAGCAGC------AGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 24477 0.68 0.605701
Target:  5'- gGGGGCGUUG-GuCUCGaUgGUCCcGGCGa -3'
miRNA:   3'- -CCCCGCAGCgC-GAGC-AgCAGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 26350 0.71 0.456094
Target:  5'- cGGGGCGgcggCGgGC-CG-CGUCgGGGCGc -3'
miRNA:   3'- -CCCCGCa---GCgCGaGCaGCAGgCUCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.