miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29384 5' -61 NC_006151.1 + 5623 0.66 0.740446
Target:  5'- gGGGGCG-C-CGC-CGcCG-CCGGGCGc -3'
miRNA:   3'- -CCCCGCaGcGCGaGCaGCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 89663 0.66 0.749681
Target:  5'- aGGuGGCG-CGUGCUCGggCG-CacaaaGAGCGa -3'
miRNA:   3'- -CC-CCGCaGCGCGAGCa-GCaGg----CUCGC- -5'
29384 5' -61 NC_006151.1 + 4223 0.66 0.749681
Target:  5'- cGGGGCG-CGgGCgggCG-CGggcagCCgGAGCGg -3'
miRNA:   3'- -CCCCGCaGCgCGa--GCaGCa----GG-CUCGC- -5'
29384 5' -61 NC_006151.1 + 95445 0.66 0.749681
Target:  5'- gGGcGGCGcCGCGCg---UGUCCGuGUGg -3'
miRNA:   3'- -CC-CCGCaGCGCGagcaGCAGGCuCGC- -5'
29384 5' -61 NC_006151.1 + 98656 0.66 0.749681
Target:  5'- cGGGCG-CGCGCUCcgccgacgaCGUCCuGGCc -3'
miRNA:   3'- cCCCGCaGCGCGAGca-------GCAGGcUCGc -5'
29384 5' -61 NC_006151.1 + 97847 0.66 0.730189
Target:  5'- --uGCG-CGCGCagcgCGUCGUCCGcguucucGGCGg -3'
miRNA:   3'- cccCGCaGCGCGa---GCAGCAGGC-------UCGC- -5'
29384 5' -61 NC_006151.1 + 70874 0.66 0.725495
Target:  5'- cGGGCGccuccgccgacgagaUCGCGCgcugCGUCGUgCGcugccuGGCGc -3'
miRNA:   3'- cCCCGC---------------AGCGCGa---GCAGCAgGC------UCGC- -5'
29384 5' -61 NC_006151.1 + 94982 0.66 0.702727
Target:  5'- cGGaGCGagaCGCGCUCGUaggCGUCaaaGGGCa -3'
miRNA:   3'- cCC-CGCa--GCGCGAGCA---GCAGg--CUCGc -5'
29384 5' -61 NC_006151.1 + 130784 0.66 0.702727
Target:  5'- cGGGCauGUCGCGCguccagcuggCGUacgcggCGUCCGGGUc -3'
miRNA:   3'- cCCCG--CAGCGCGa---------GCA------GCAGGCUCGc -5'
29384 5' -61 NC_006151.1 + 130681 0.66 0.702727
Target:  5'- cGGGGCG-CgGCGCagGaUGUCCGGGgGc -3'
miRNA:   3'- -CCCCGCaG-CGCGagCaGCAGGCUCgC- -5'
29384 5' -61 NC_006151.1 + 136998 0.66 0.702727
Target:  5'- cGGGCG-CGCGCgcaCGgCG-CUGGGCGc -3'
miRNA:   3'- cCCCGCaGCGCGa--GCaGCaGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 26871 0.66 0.712258
Target:  5'- -cGGCGUCGUcCUCGUCGacgucgcacuccUCCccaaaGAGCGg -3'
miRNA:   3'- ccCCGCAGCGcGAGCAGC------------AGG-----CUCGC- -5'
29384 5' -61 NC_006151.1 + 33122 0.66 0.712258
Target:  5'- uGGGCG-CGUGC-CG-CGggCCGAGUGu -3'
miRNA:   3'- cCCCGCaGCGCGaGCaGCa-GGCUCGC- -5'
29384 5' -61 NC_006151.1 + 75654 0.66 0.712258
Target:  5'- gGGGGC--CG-GCUCGcCG-CCGAGCa -3'
miRNA:   3'- -CCCCGcaGCgCGAGCaGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 135018 0.66 0.712258
Target:  5'- cGGGGgGgcaGCaGCggggccgCGUCGUCCucgGGGCGg -3'
miRNA:   3'- -CCCCgCag-CG-CGa------GCAGCAGG---CUCGC- -5'
29384 5' -61 NC_006151.1 + 67486 0.66 0.720783
Target:  5'- cGGGcacccgcacacgaGCG-CGCgGCUCG-CGUCCGGGUc -3'
miRNA:   3'- -CCC-------------CGCaGCG-CGAGCaGCAGGCUCGc -5'
29384 5' -61 NC_006151.1 + 83371 0.66 0.720783
Target:  5'- cGGGCG-CGCaggcgccgcagguGCUCGUCcggGUCC-AGCGa -3'
miRNA:   3'- cCCCGCaGCG-------------CGAGCAG---CAGGcUCGC- -5'
29384 5' -61 NC_006151.1 + 57537 0.66 0.721727
Target:  5'- cGGcGCGgccgCGgGCaCGUCG-CCGAGCa -3'
miRNA:   3'- cCC-CGCa---GCgCGaGCAGCaGGCUCGc -5'
29384 5' -61 NC_006151.1 + 131444 0.66 0.721727
Target:  5'- cGGGCGgCGgGCggaa-GUCCGGGCGc -3'
miRNA:   3'- cCCCGCaGCgCGagcagCAGGCUCGC- -5'
29384 5' -61 NC_006151.1 + 115209 0.66 0.721727
Target:  5'- cGGGCG-CGCGCgCGaUCGUggccgcugccgCCGAGaCGg -3'
miRNA:   3'- cCCCGCaGCGCGaGC-AGCA-----------GGCUC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.