miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 60712 0.66 0.776033
Target:  5'- cCGCCGCGACCUCGgccccGAGGuGCCg--- -3'
miRNA:   3'- cGCGGCGUUGGGGUa----CUUC-CGGgaca -5'
29385 3' -58.9 NC_006151.1 + 61314 0.66 0.747794
Target:  5'- cGCGCUGCAGgUCCAgGGAGacGCCCg-- -3'
miRNA:   3'- -CGCGGCGUUgGGGUaCUUC--CGGGaca -5'
29385 3' -58.9 NC_006151.1 + 64307 0.7 0.547853
Target:  5'- cGUGCCGCAGCgCgCCGUGcuGGCCUc-- -3'
miRNA:   3'- -CGCGGCGUUG-G-GGUACuuCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 64531 0.67 0.718658
Target:  5'- cCGCCGCGGCCgCGUcGGgggcggcgAGGCCgUGg -3'
miRNA:   3'- cGCGGCGUUGGgGUA-CU--------UCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 65514 0.66 0.756371
Target:  5'- cGCGCCuccuccgcggccaGCAGCgUCAUGAcGGCCUcGUg -3'
miRNA:   3'- -CGCGG-------------CGUUGgGGUACUuCCGGGaCA- -5'
29385 3' -58.9 NC_006151.1 + 67748 0.69 0.577756
Target:  5'- gGCGCgGCGGCCCCGUcGGGGUgCg-- -3'
miRNA:   3'- -CGCGgCGUUGGGGUAcUUCCGgGaca -5'
29385 3' -58.9 NC_006151.1 + 68187 0.66 0.746836
Target:  5'- gGCGUCGUugagcagGACCacgaCGUGGAagcGGCCCUGc -3'
miRNA:   3'- -CGCGGCG-------UUGGg---GUACUU---CCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 68794 0.67 0.688868
Target:  5'- cCGCCGCGGCCgUCAUc-AGGCCCg-- -3'
miRNA:   3'- cGCGGCGUUGG-GGUAcuUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 69216 0.67 0.718658
Target:  5'- cGCGCCgGCcGCCCCAggcggUGGAGuGCUCg-- -3'
miRNA:   3'- -CGCGG-CGuUGGGGU-----ACUUC-CGGGaca -5'
29385 3' -58.9 NC_006151.1 + 69380 0.66 0.747794
Target:  5'- aGCGCCGuCAGCggCC--GggGGUCCUGg -3'
miRNA:   3'- -CGCGGC-GUUGg-GGuaCuuCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 70637 0.67 0.708789
Target:  5'- gGCGCCGUGGCCgCGcgcGAGGcGCCCg-- -3'
miRNA:   3'- -CGCGGCGUUGGgGUa--CUUC-CGGGaca -5'
29385 3' -58.9 NC_006151.1 + 71232 0.7 0.547853
Target:  5'- cGCGCgCGcCGACCCCGUcGAGuaCCUGa -3'
miRNA:   3'- -CGCG-GC-GUUGGGGUAcUUCcgGGACa -5'
29385 3' -58.9 NC_006151.1 + 71338 0.7 0.53799
Target:  5'- uGCGCCGaCGACCUCGccguGGCCCUcGUc -3'
miRNA:   3'- -CGCGGC-GUUGGGGUacuuCCGGGA-CA- -5'
29385 3' -58.9 NC_006151.1 + 73612 0.71 0.489701
Target:  5'- gGCGCCGCAGCUgguggGUGAAGGCCacgGg -3'
miRNA:   3'- -CGCGGCGUUGGgg---UACUUCCGGga-Ca -5'
29385 3' -58.9 NC_006151.1 + 74610 0.68 0.638404
Target:  5'- gGCGCCGCAgggcgugcacguGCUCCAgc-AGGuCCUUGUa -3'
miRNA:   3'- -CGCGGCGU------------UGGGGUacuUCC-GGGACA- -5'
29385 3' -58.9 NC_006151.1 + 74868 0.69 0.606989
Target:  5'- gGCGCCGCGcaccgcgGCCaCCGUGGccgGGGCCa--- -3'
miRNA:   3'- -CGCGGCGU-------UGG-GGUACU---UCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 76795 0.67 0.708789
Target:  5'- gGCGCCGUAcagcGCCCCGgcGAGGGCg---- -3'
miRNA:   3'- -CGCGGCGU----UGGGGUa-CUUCCGggaca -5'
29385 3' -58.9 NC_006151.1 + 78157 0.69 0.597893
Target:  5'- aCGCCuCGGCCgCCGUGGucgAGGCCgUGUc -3'
miRNA:   3'- cGCGGcGUUGG-GGUACU---UCCGGgACA- -5'
29385 3' -58.9 NC_006151.1 + 78712 0.68 0.638404
Target:  5'- uCGCCGCGACggcgCCCGUGGGgcgcgcgcugcGGCCCa-- -3'
miRNA:   3'- cGCGGCGUUG----GGGUACUU-----------CCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 78799 0.69 0.567742
Target:  5'- cGC-CCGCGGCCCUccGcGGGGCCCaGUa -3'
miRNA:   3'- -CGcGGCGUUGGGGuaC-UUCCGGGaCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.