miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 40036 0.68 0.657649
Target:  5'- cGCGCCGCcGCCgggggcgCCGUGGAgacccaccGGCCCg-- -3'
miRNA:   3'- -CGCGGCGuUGG-------GGUACUU--------CCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 40087 0.68 0.618128
Target:  5'- gGCGCCGgggcCGGCCCCGgcgagGAcgGGGaCUCUGUg -3'
miRNA:   3'- -CGCGGC----GUUGGGGUa----CU--UCC-GGGACA- -5'
29385 3' -58.9 NC_006151.1 + 40458 0.66 0.747794
Target:  5'- gGCGCCuGCcuCCCCGgcccGguGGCCCUc- -3'
miRNA:   3'- -CGCGG-CGuuGGGGUa---CuuCCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 42585 0.69 0.597893
Target:  5'- cGCGCCGCccguCCCCGa-GAGGCCUa-- -3'
miRNA:   3'- -CGCGGCGuu--GGGGUacUUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 45523 0.69 0.587809
Target:  5'- -aGCCGuCGACCCaccgcggGAGGGCCCg-- -3'
miRNA:   3'- cgCGGC-GUUGGGgua----CUUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 49582 0.66 0.776033
Target:  5'- cGCGCuCGCcggcGCCCCGgccagcgcgcUGccGGUCCUGg -3'
miRNA:   3'- -CGCG-GCGu---UGGGGU----------ACuuCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 52016 0.68 0.618128
Target:  5'- uGCGCCGCGccaGCUCCucggcGAAGGCCg--- -3'
miRNA:   3'- -CGCGGCGU---UGGGGua---CUUCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 52472 0.69 0.567742
Target:  5'- gGCGCCGguaGGCCgCCGUGAcGGCCUcGg -3'
miRNA:   3'- -CGCGGCg--UUGG-GGUACUuCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 52774 0.68 0.618128
Target:  5'- aGCGCCGCGGCgUCC-UGGucgcGGCUCUGc -3'
miRNA:   3'- -CGCGGCGUUG-GGGuACUu---CCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 53518 0.69 0.608001
Target:  5'- cCGCCGCGcGCCCCGUGAgccgcuccaGGGCgCg-- -3'
miRNA:   3'- cGCGGCGU-UGGGGUACU---------UCCGgGaca -5'
29385 3' -58.9 NC_006151.1 + 54398 0.7 0.518454
Target:  5'- cGCGCgCGCGGCCUCGgcgccGAGGCgCUGg -3'
miRNA:   3'- -CGCG-GCGUUGGGGUac---UUCCGgGACa -5'
29385 3' -58.9 NC_006151.1 + 55453 0.72 0.40842
Target:  5'- gGCGCCGcCGGCCCCGccgGggGGCgCg-- -3'
miRNA:   3'- -CGCGGC-GUUGGGGUa--CuuCCGgGaca -5'
29385 3' -58.9 NC_006151.1 + 55900 0.71 0.461715
Target:  5'- uGCGCCgggcgaccgaGCGGCUCCGcgaUGGAGGCCgUGa -3'
miRNA:   3'- -CGCGG----------CGUUGGGGU---ACUUCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 56109 0.69 0.577756
Target:  5'- cCGCCGCuGCCUCGccggGGAGGCCUUc- -3'
miRNA:   3'- cGCGGCGuUGGGGUa---CUUCCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 56205 0.66 0.785205
Target:  5'- gGCGCUGCcgcACCgCCu----GGCCCUGg -3'
miRNA:   3'- -CGCGGCGu--UGG-GGuacuuCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 57749 0.71 0.443533
Target:  5'- cGCGCCGCAGCCgCucgu-GGCCCgGg -3'
miRNA:   3'- -CGCGGCGUUGGgGuacuuCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 58749 0.67 0.728455
Target:  5'- aGCGCCGCGGCCaCCGcGGccGCCgaGc -3'
miRNA:   3'- -CGCGGCGUUGG-GGUaCUucCGGgaCa -5'
29385 3' -58.9 NC_006151.1 + 59519 0.8 0.133867
Target:  5'- cGCGCgCGCAGCgCCgCGUGAGGGCCCa-- -3'
miRNA:   3'- -CGCG-GCGUUG-GG-GUACUUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 60272 0.74 0.343659
Target:  5'- cCGCCGCAcgcGCCCCGUGGacugguagacggAGGCCaUGUc -3'
miRNA:   3'- cGCGGCGU---UGGGGUACU------------UCCGGgACA- -5'
29385 3' -58.9 NC_006151.1 + 60412 0.66 0.776033
Target:  5'- cGCGCacggcccaGCGGCCCaCGUccucgGggGGCCgCUGc -3'
miRNA:   3'- -CGCGg-------CGUUGGG-GUA-----CuuCCGG-GACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.