miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 107660 0.7 0.547853
Target:  5'- cGCaGCCGCAGCCgCAgcaGGGGCCCc-- -3'
miRNA:   3'- -CG-CGGCGUUGGgGUac-UUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 98631 0.69 0.557773
Target:  5'- uGCGCCGC--CUUCGacGAGGCCCUGg -3'
miRNA:   3'- -CGCGGCGuuGGGGUacUUCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 86236 0.69 0.567742
Target:  5'- cGCGCUGCGACaucggcgCCGUGcuGGCCgUGg -3'
miRNA:   3'- -CGCGGCGUUGg------GGUACuuCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 95223 0.69 0.567742
Target:  5'- uGCGCCGCAcGCCCUcgaccGAGGcGCCCgucggGUa -3'
miRNA:   3'- -CGCGGCGU-UGGGGua---CUUC-CGGGa----CA- -5'
29385 3' -58.9 NC_006151.1 + 78799 0.69 0.567742
Target:  5'- cGC-CCGCGGCCCUccGcGGGGCCCaGUa -3'
miRNA:   3'- -CGcGGCGUUGGGGuaC-UUCCGGGaCA- -5'
29385 3' -58.9 NC_006151.1 + 52472 0.69 0.567742
Target:  5'- gGCGCCGguaGGCCgCCGUGAcGGCCUcGg -3'
miRNA:   3'- -CGCGGCg--UUGG-GGUACUuCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 19342 0.69 0.571743
Target:  5'- gGC-CCGCGGCCCCGaggcgucgugcagcgUGuaGAGGCCCgUGUc -3'
miRNA:   3'- -CGcGGCGUUGGGGU---------------AC--UUCCGGG-ACA- -5'
29385 3' -58.9 NC_006151.1 + 67748 0.69 0.577756
Target:  5'- gGCGCgGCGGCCCCGUcGGGGUgCg-- -3'
miRNA:   3'- -CGCGgCGUUGGGGUAcUUCCGgGaca -5'
29385 3' -58.9 NC_006151.1 + 94768 0.69 0.577756
Target:  5'- gGCGCCGCAGCgucUCCAUGAGcGGCaggUUGg -3'
miRNA:   3'- -CGCGGCGUUG---GGGUACUU-CCGg--GACa -5'
29385 3' -58.9 NC_006151.1 + 56109 0.69 0.577756
Target:  5'- cCGCCGCuGCCUCGccggGGAGGCCUUc- -3'
miRNA:   3'- cGCGGCGuUGGGGUa---CUUCCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 123891 0.69 0.587809
Target:  5'- uCGCCGCGGCCCCGccgugcggcgcGgcGGCCgUGa -3'
miRNA:   3'- cGCGGCGUUGGGGUa----------CuuCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 85441 0.69 0.587809
Target:  5'- cGCGCCGCGGCCgCCuuccuGGGCCg--- -3'
miRNA:   3'- -CGCGGCGUUGG-GGuacu-UCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 45523 0.69 0.587809
Target:  5'- -aGCCGuCGACCCaccgcggGAGGGCCCg-- -3'
miRNA:   3'- cgCGGC-GUUGGGgua----CUUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 135906 0.69 0.587809
Target:  5'- cCGCCGCGACCCCGgc--GGUCgUGc -3'
miRNA:   3'- cGCGGCGUUGGGGUacuuCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 129781 0.69 0.596883
Target:  5'- gGCGUCGCucccgccggcgugGGCCCgCAUG-AGGCCCgUGa -3'
miRNA:   3'- -CGCGGCG-------------UUGGG-GUACuUCCGGG-ACa -5'
29385 3' -58.9 NC_006151.1 + 8302 0.69 0.597893
Target:  5'- gGCGCCGCGucccgccccgaGCCCCcgGGgcgcgcGGGCCUcGa -3'
miRNA:   3'- -CGCGGCGU-----------UGGGGuaCU------UCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 78157 0.69 0.597893
Target:  5'- aCGCCuCGGCCgCCGUGGucgAGGCCgUGUc -3'
miRNA:   3'- cGCGGcGUUGG-GGUACU---UCCGGgACA- -5'
29385 3' -58.9 NC_006151.1 + 103173 0.69 0.597893
Target:  5'- cGCGCUuCGACgCCAUGGAcgccGCCCUGg -3'
miRNA:   3'- -CGCGGcGUUGgGGUACUUc---CGGGACa -5'
29385 3' -58.9 NC_006151.1 + 32779 0.69 0.597893
Target:  5'- aCGCCGCGGCCgCG-GggGGCCg--- -3'
miRNA:   3'- cGCGGCGUUGGgGUaCuuCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 42585 0.69 0.597893
Target:  5'- cGCGCCGCccguCCCCGa-GAGGCCUa-- -3'
miRNA:   3'- -CGCGGCGuu--GGGGUacUUCCGGGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.