miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 112708 0.67 0.728455
Target:  5'- cGCGgCGCuguGCgCCA---AGGCCCUGg -3'
miRNA:   3'- -CGCgGCGu--UGgGGUacuUCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 116998 0.67 0.728455
Target:  5'- gGUGCCGCAGCaccacgcgcuCCCccGcGGGCCCgGg -3'
miRNA:   3'- -CGCGGCGUUG----------GGGuaCuUCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 5699 0.67 0.718658
Target:  5'- gGCGCUGCGGCCaCCGcUGcuGGCUgUGc -3'
miRNA:   3'- -CGCGGCGUUGG-GGU-ACuuCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 14825 0.67 0.718658
Target:  5'- cGCGuCCGCcGCgCCCAUGGaccgggucuGGGCCgaCUGg -3'
miRNA:   3'- -CGC-GGCGuUG-GGGUACU---------UCCGG--GACa -5'
29385 3' -58.9 NC_006151.1 + 37411 0.67 0.718658
Target:  5'- gGCGCCgGgGACuCCCGcGAgGGGCUCUGg -3'
miRNA:   3'- -CGCGG-CgUUG-GGGUaCU-UCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 110915 0.67 0.718658
Target:  5'- cGUGCCGCAGgUUCAcGAGGGCCaggGa -3'
miRNA:   3'- -CGCGGCGUUgGGGUaCUUCCGGga-Ca -5'
29385 3' -58.9 NC_006151.1 + 114163 0.67 0.718658
Target:  5'- aGCGaCCGCGcgGCCCuCGUGcuGGCCUa-- -3'
miRNA:   3'- -CGC-GGCGU--UGGG-GUACuuCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 64531 0.67 0.718658
Target:  5'- cCGCCGCGGCCgCGUcGGgggcggcgAGGCCgUGg -3'
miRNA:   3'- cGCGGCGUUGGgGUA-CU--------UCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 69216 0.67 0.718658
Target:  5'- cGCGCCgGCcGCCCCAggcggUGGAGuGCUCg-- -3'
miRNA:   3'- -CGCGG-CGuUGGGGU-----ACUUC-CGGGaca -5'
29385 3' -58.9 NC_006151.1 + 89545 0.67 0.708789
Target:  5'- aGCGCCG-AGgCCgGUGGAGGCCg--- -3'
miRNA:   3'- -CGCGGCgUUgGGgUACUUCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 5331 0.67 0.708789
Target:  5'- -aGCCGCGGCCgCGgcgGAGGGCgCCc-- -3'
miRNA:   3'- cgCGGCGUUGGgGUa--CUUCCG-GGaca -5'
29385 3' -58.9 NC_006151.1 + 70637 0.67 0.708789
Target:  5'- gGCGCCGUGGCCgCGcgcGAGGcGCCCg-- -3'
miRNA:   3'- -CGCGGCGUUGGgGUa--CUUC-CGGGaca -5'
29385 3' -58.9 NC_006151.1 + 76795 0.67 0.708789
Target:  5'- gGCGCCGUAcagcGCCCCGgcGAGGGCg---- -3'
miRNA:   3'- -CGCGGCGU----UGGGGUa-CUUCCGggaca -5'
29385 3' -58.9 NC_006151.1 + 84529 0.67 0.708789
Target:  5'- cGCGCCcCcguuCCCCGUGGgcuucuGGGCCCg-- -3'
miRNA:   3'- -CGCGGcGuu--GGGGUACU------UCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 114675 0.67 0.708789
Target:  5'- aGCGCCGCGaagGCCUCGUGcucgaAGGGCgCg-- -3'
miRNA:   3'- -CGCGGCGU---UGGGGUAC-----UUCCGgGaca -5'
29385 3' -58.9 NC_006151.1 + 130561 0.67 0.698856
Target:  5'- cGCGCUGCcGCCCCAcGAGuGCaUCUGg -3'
miRNA:   3'- -CGCGGCGuUGGGGUaCUUcCG-GGACa -5'
29385 3' -58.9 NC_006151.1 + 129519 0.67 0.698856
Target:  5'- -aGCCGCuuGCCgCCGacggGggGGCCCgGg -3'
miRNA:   3'- cgCGGCGu-UGG-GGUa---CuuCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 136862 0.67 0.688868
Target:  5'- cGCGCCGCGugACCgCCGUcGAGGaGCgCCUc- -3'
miRNA:   3'- -CGCGGCGU--UGG-GGUA-CUUC-CG-GGAca -5'
29385 3' -58.9 NC_006151.1 + 68794 0.67 0.688868
Target:  5'- cCGCCGCGGCCgUCAUc-AGGCCCg-- -3'
miRNA:   3'- cGCGGCGUUGG-GGUAcuUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 36039 0.67 0.688868
Target:  5'- gGCGCCGCGGCUCCuccggcGAGgaucuccucuucGGCCCgGg -3'
miRNA:   3'- -CGCGGCGUUGGGGua----CUU------------CCGGGaCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.