miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 85065 0.67 0.678834
Target:  5'- gGCGCUGCAGgCC--UGcGGGCgCCUGUa -3'
miRNA:   3'- -CGCGGCGUUgGGguACuUCCG-GGACA- -5'
29385 3' -58.9 NC_006151.1 + 119054 0.67 0.678834
Target:  5'- gGCGCCGCGGCCgCCuccgcgGgcGcGCCCg-- -3'
miRNA:   3'- -CGCGGCGUUGG-GGua----CuuC-CGGGaca -5'
29385 3' -58.9 NC_006151.1 + 141862 0.68 0.668762
Target:  5'- cGCGCCGCGcCCUCuggugccgGAGGGCCg--- -3'
miRNA:   3'- -CGCGGCGUuGGGGua------CUUCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 91293 0.68 0.668762
Target:  5'- cGCGCCGCGucagcagccGCgCCggGAAGGCgCCg-- -3'
miRNA:   3'- -CGCGGCGU---------UGgGGuaCUUCCG-GGaca -5'
29385 3' -58.9 NC_006151.1 + 132768 0.68 0.668762
Target:  5'- aGCGCCGgGcCCUCGUcGAAGGCCa--- -3'
miRNA:   3'- -CGCGGCgUuGGGGUA-CUUCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 38572 0.68 0.658661
Target:  5'- aGCGCCGC-GCgCCCG---GGGCCCg-- -3'
miRNA:   3'- -CGCGGCGuUG-GGGUacuUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 96521 0.68 0.658661
Target:  5'- cGCGCuCGUccaCCCGggaGAAGGCCUUGa -3'
miRNA:   3'- -CGCG-GCGuugGGGUa--CUUCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 40036 0.68 0.657649
Target:  5'- cGCGCCGCcGCCgggggcgCCGUGGAgacccaccGGCCCg-- -3'
miRNA:   3'- -CGCGGCGuUGG-------GGUACUU--------CCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 109247 0.68 0.648539
Target:  5'- cCGCCGCGGuCUCCGcUGgcGGCCCcGa -3'
miRNA:   3'- cGCGGCGUU-GGGGU-ACuuCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 31024 0.68 0.648539
Target:  5'- cCGCCGCGGCCCUcgc--GGCCCgGg -3'
miRNA:   3'- cGCGGCGUUGGGGuacuuCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 6230 0.68 0.648539
Target:  5'- -aGCCGCGGCgCCG-GGA-GCCCUGg -3'
miRNA:   3'- cgCGGCGUUGgGGUaCUUcCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 74610 0.68 0.638404
Target:  5'- gGCGCCGCAgggcgugcacguGCUCCAgc-AGGuCCUUGUa -3'
miRNA:   3'- -CGCGGCGU------------UGGGGUacuUCC-GGGACA- -5'
29385 3' -58.9 NC_006151.1 + 78712 0.68 0.638404
Target:  5'- uCGCCGCGACggcgCCCGUGGGgcgcgcgcugcGGCCCa-- -3'
miRNA:   3'- cGCGGCGUUG----GGGUACUU-----------CCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 130346 0.68 0.638404
Target:  5'- cGCGCCGCGGCgUCGUGGuugacGGCCg--- -3'
miRNA:   3'- -CGCGGCGUUGgGGUACUu----CCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 120335 0.68 0.628264
Target:  5'- aCGCCGCGcgcGCCCgCGUGGccGGGCUCg-- -3'
miRNA:   3'- cGCGGCGU---UGGG-GUACU--UCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 38112 0.68 0.628264
Target:  5'- cGCGaCGCGAUCCCcgGGGccGGCCCg-- -3'
miRNA:   3'- -CGCgGCGUUGGGGuaCUU--CCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 25415 0.68 0.628264
Target:  5'- gGCGCCGCcGCCCCAcGcgcGCCCg-- -3'
miRNA:   3'- -CGCGGCGuUGGGGUaCuucCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 52016 0.68 0.618128
Target:  5'- uGCGCCGCGccaGCUCCucggcGAAGGCCg--- -3'
miRNA:   3'- -CGCGGCGU---UGGGGua---CUUCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 30907 0.68 0.618128
Target:  5'- cGCGCgGUAGCgCCCGcgGgcGGCCCg-- -3'
miRNA:   3'- -CGCGgCGUUG-GGGUa-CuuCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 127696 0.68 0.618128
Target:  5'- gGCGCUcuccuGCGACgagCUCGUGGAGGCCCcGg -3'
miRNA:   3'- -CGCGG-----CGUUG---GGGUACUUCCGGGaCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.