miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 121770 0.72 0.425761
Target:  5'- aGCGCUGCGACCCCGcggUGGugcgcgagcuGGCCCc-- -3'
miRNA:   3'- -CGCGGCGUUGGGGU---ACUu---------CCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 103914 0.72 0.434594
Target:  5'- gGCGCgCGCGGCCgCCGUGGAGGagCCg-- -3'
miRNA:   3'- -CGCG-GCGUUGG-GGUACUUCCg-GGaca -5'
29385 3' -58.9 NC_006151.1 + 57749 0.71 0.443533
Target:  5'- cGCGCCGCAGCCgCucgu-GGCCCgGg -3'
miRNA:   3'- -CGCGGCGUUGGgGuacuuCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 128813 0.71 0.452574
Target:  5'- gGCGCgCGUGGCCCCGUacgcGGcgcucuGGGCCUUGUg -3'
miRNA:   3'- -CGCG-GCGUUGGGGUA----CU------UCCGGGACA- -5'
29385 3' -58.9 NC_006151.1 + 82678 0.71 0.458962
Target:  5'- cGCGCCGCGGgcgagggcggcggcCCCCGcGAGGGCCa--- -3'
miRNA:   3'- -CGCGGCGUU--------------GGGGUaCUUCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 55900 0.71 0.461715
Target:  5'- uGCGCCgggcgaccgaGCGGCUCCGcgaUGGAGGCCgUGa -3'
miRNA:   3'- -CGCGG----------CGUUGGGGU---ACUUCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 37335 0.71 0.461715
Target:  5'- cGgGCCGCugcucACCCCGcucGggGaGCCCUGg -3'
miRNA:   3'- -CgCGGCGu----UGGGGUa--CuuC-CGGGACa -5'
29385 3' -58.9 NC_006151.1 + 29070 0.71 0.470952
Target:  5'- gGCGCCGCgGGCCCCGaGAcGGCCg--- -3'
miRNA:   3'- -CGCGGCG-UUGGGGUaCUuCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 99124 0.71 0.480282
Target:  5'- gGCGCUGCugGACCCCggGGcgcAGGCCgUGc -3'
miRNA:   3'- -CGCGGCG--UUGGGGuaCU---UCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 39867 0.71 0.480282
Target:  5'- aGCuCCGCGGCCCC--GAGGGCCUg-- -3'
miRNA:   3'- -CGcGGCGUUGGGGuaCUUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 123315 0.71 0.489701
Target:  5'- cGCGCa-CAGCUUCAUGAAGGCCacgGUg -3'
miRNA:   3'- -CGCGgcGUUGGGGUACUUCCGGga-CA- -5'
29385 3' -58.9 NC_006151.1 + 73612 0.71 0.489701
Target:  5'- gGCGCCGCAGCUgguggGUGAAGGCCacgGg -3'
miRNA:   3'- -CGCGGCGUUGGgg---UACUUCCGGga-Ca -5'
29385 3' -58.9 NC_006151.1 + 135381 0.7 0.50783
Target:  5'- uGCGCCGCGACCacggcguccaggCCGUcgucgccGGAGGCCUcGUg -3'
miRNA:   3'- -CGCGGCGUUGG------------GGUA-------CUUCCGGGaCA- -5'
29385 3' -58.9 NC_006151.1 + 54398 0.7 0.518454
Target:  5'- cGCGCgCGCGGCCUCGgcgccGAGGCgCUGg -3'
miRNA:   3'- -CGCG-GCGUUGGGGUac---UUCCGgGACa -5'
29385 3' -58.9 NC_006151.1 + 36571 0.7 0.528189
Target:  5'- -gGCCGCAGCgCCGgcacggcGggGGCCCg-- -3'
miRNA:   3'- cgCGGCGUUGgGGUa------CuuCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 109520 0.7 0.535043
Target:  5'- cCGCCGCAgccgucucagcagcGCCCCccGGAGGCgCCgUGg -3'
miRNA:   3'- cGCGGCGU--------------UGGGGuaCUUCCG-GG-ACa -5'
29385 3' -58.9 NC_006151.1 + 71338 0.7 0.53799
Target:  5'- uGCGCCGaCGACCUCGccguGGCCCUcGUc -3'
miRNA:   3'- -CGCGGC-GUUGGGGUacuuCCGGGA-CA- -5'
29385 3' -58.9 NC_006151.1 + 64307 0.7 0.547853
Target:  5'- cGUGCCGCAGCgCgCCGUGcuGGCCUc-- -3'
miRNA:   3'- -CGCGGCGUUG-G-GGUACuuCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 37867 0.7 0.547853
Target:  5'- cGCGCCGCgGACCCCcgcgccgggGAggcgaccgucgAGGCCCUc- -3'
miRNA:   3'- -CGCGGCG-UUGGGGua-------CU-----------UCCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 107660 0.7 0.547853
Target:  5'- cGCaGCCGCAGCCgCAgcaGGGGCCCc-- -3'
miRNA:   3'- -CG-CGGCGUUGGgGUac-UUCCGGGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.