miRNA display CGI


Results 21 - 40 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 30907 0.68 0.618128
Target:  5'- cGCGCgGUAGCgCCCGcgGgcGGCCCg-- -3'
miRNA:   3'- -CGCGgCGUUG-GGGUa-CuuCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 31024 0.68 0.648539
Target:  5'- cCGCCGCGGCCCUcgc--GGCCCgGg -3'
miRNA:   3'- cGCGGCGUUGGGGuacuuCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 32779 0.69 0.597893
Target:  5'- aCGCCGCGGCCgCG-GggGGCCg--- -3'
miRNA:   3'- cGCGGCGUUGGgGUaCuuCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 36039 0.67 0.688868
Target:  5'- gGCGCCGCGGCUCCuccggcGAGgaucuccucuucGGCCCgGg -3'
miRNA:   3'- -CGCGGCGUUGGGGua----CUU------------CCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 36385 0.66 0.757319
Target:  5'- -gGCCGgGGCCCCcgGc-GGCCCcGg -3'
miRNA:   3'- cgCGGCgUUGGGGuaCuuCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 36571 0.7 0.528189
Target:  5'- -gGCCGCAGCgCCGgcacggcGggGGCCCg-- -3'
miRNA:   3'- cgCGGCGUUGgGGUa------CuuCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 36829 0.66 0.757319
Target:  5'- cGC-CCGCGGCCCCGaGAAGGaCgaGg -3'
miRNA:   3'- -CGcGGCGUUGGGGUaCUUCCgGgaCa -5'
29385 3' -58.9 NC_006151.1 + 37181 0.74 0.336102
Target:  5'- cCGCCGCGGCCCCGc---GGCCCUc- -3'
miRNA:   3'- cGCGGCGUUGGGGUacuuCCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 37223 0.66 0.776033
Target:  5'- cCGCCGCGGCCuCCccGGccccGGCCCcGg -3'
miRNA:   3'- cGCGGCGUUGG-GGuaCUu---CCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 37335 0.71 0.461715
Target:  5'- cGgGCCGCugcucACCCCGcucGggGaGCCCUGg -3'
miRNA:   3'- -CgCGGCGu----UGGGGUa--CuuC-CGGGACa -5'
29385 3' -58.9 NC_006151.1 + 37411 0.67 0.718658
Target:  5'- gGCGCCgGgGACuCCCGcGAgGGGCUCUGg -3'
miRNA:   3'- -CGCGG-CgUUG-GGGUaCU-UCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 37477 0.66 0.757319
Target:  5'- cGCGCCGCGGCC------GGGCCCg-- -3'
miRNA:   3'- -CGCGGCGUUGGgguacuUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 37731 0.66 0.785205
Target:  5'- -gGCCGCccagGACCCgCucu-GGGCCCUGc -3'
miRNA:   3'- cgCGGCG----UUGGG-GuacuUCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 37867 0.7 0.547853
Target:  5'- cGCGCCGCgGACCCCcgcgccgggGAggcgaccgucgAGGCCCUc- -3'
miRNA:   3'- -CGCGGCG-UUGGGGua-------CU-----------UCCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 38112 0.68 0.628264
Target:  5'- cGCGaCGCGAUCCCcgGGGccGGCCCg-- -3'
miRNA:   3'- -CGCgGCGUUGGGGuaCUU--CCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 38572 0.68 0.658661
Target:  5'- aGCGCCGC-GCgCCCG---GGGCCCg-- -3'
miRNA:   3'- -CGCGGCGuUG-GGGUacuUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 38698 0.74 0.314165
Target:  5'- aGCGCCGCu-CCCUcgGAcucGGGCCCg-- -3'
miRNA:   3'- -CGCGGCGuuGGGGuaCU---UCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 38865 0.75 0.280045
Target:  5'- aCGCCGCGGCCCUccGAGgcGGCCCUc- -3'
miRNA:   3'- cGCGGCGUUGGGGuaCUU--CCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 39535 0.66 0.776033
Target:  5'- -gGCCuGCuucGCCCgCGUGGAGGCCUc-- -3'
miRNA:   3'- cgCGG-CGu--UGGG-GUACUUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 39867 0.71 0.480282
Target:  5'- aGCuCCGCGGCCCC--GAGGGCCUg-- -3'
miRNA:   3'- -CGcGGCGUUGGGGuaCUUCCGGGaca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.